(24 nodes) 4Fe-4S ferredoxin-type, iron-sulphur binding domain network (Pyrococcus kukulkanii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

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protein homology

Your Input:
	AMM54757.1	Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	AMM53107.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (64 aa)
	AMM53521.1	2-keto acid:ferredoxin oxidoreductase subunit alpha; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (615 aa)
	AMM53528.1	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	AMM53583.1	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	AMM53610.1	Indolepyruvate oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (646 aa)
	AMM53751.1	ATPase; Originally found to be an inhibitor of the antiviral RNase-L in human cells; contains ABC-type nucleotide binding domains; putatively functions in RNA maturation; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)
	vorD	2-ketoisovalerate ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	porD	Pyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of pyruvate to form acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	AMM53945.1	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	AMM53948.1	Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	AMM53956.1	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AMM53957.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	AMM54125.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)
	AMM54317.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)
	AMM54429.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	AMM54511.1	2-keto acid:ferredoxin oxidoreductase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	AMM54736.1	Coenzyme F420 hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	AMM54739.1	Formate dehydrogenase; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (166 aa)
	AMM54744.1	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	AMM54755.1	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
	AMM54771.1	NADH-plastoquinone oxidoreductase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	AMM54776.1	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	AMM54861.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)

Your Current Organism:

Pyrococcus kukulkanii

NCBI taxonomy Id: 1609559
Other names: DSM 101590, P. kukulkanii, Pyrococcus kukulkanii Callac et al. 2016, Pyrococcus sp. NCB100, Souchotheque de Bretagne BG1337, strain NCB100

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMM53528.1	AMM53583.1	TQ32_02775	TQ32_03130	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AMM53583.1	AMM53528.1	TQ32_03130	TQ32_02775	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AMM53945.1	AMM54429.1	TQ32_05210	TQ32_08000	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AMM53948.1	AMM54739.1	TQ32_05235	TQ32_09765	Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate dehydrogenase; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.902
AMM53956.1	AMM53957.1	TQ32_05275	TQ32_05280	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
AMM53957.1	AMM53956.1	TQ32_05280	TQ32_05275	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin biosynthesis protein CobQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.880
AMM54125.1	AMM54317.1	TQ32_06270	TQ32_07370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AMM54317.1	AMM54125.1	TQ32_07370	TQ32_06270	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
AMM54429.1	AMM53945.1	TQ32_08000	TQ32_05210	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AMM54429.1	AMM54744.1	TQ32_08000	TQ32_09795	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AMM54429.1	AMM54771.1	TQ32_08000	TQ32_09930	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-plastoquinone oxidoreductase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AMM54429.1	AMM54776.1	TQ32_08000	TQ32_09955	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AMM54739.1	AMM53948.1	TQ32_09765	TQ32_05235	Formate dehydrogenase; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
AMM54739.1	AMM54744.1	TQ32_09765	TQ32_09795	Formate dehydrogenase; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
AMM54744.1	AMM54429.1	TQ32_09795	TQ32_08000	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
AMM54744.1	AMM54739.1	TQ32_09795	TQ32_09765	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate dehydrogenase; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.	0.672
AMM54744.1	AMM54755.1	TQ32_09795	TQ32_09850	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
AMM54744.1	AMM54757.1	TQ32_09795	TQ32_09860	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
AMM54744.1	AMM54771.1	TQ32_09795	TQ32_09930	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-plastoquinone oxidoreductase subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
AMM54755.1	AMM54744.1	TQ32_09850	TQ32_09795	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408

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