(55 nodes) O-Antigen nucleotide sugar biosynthesis, and Carbohydrate biosynthetic process network (Novosphingobium sp. P6W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KIS34545.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	KIS33679.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (744 aa)
	KIS33680.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	KIS33681.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	KIS33682.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	KIS33685.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	KIS33688.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	KIS34051.1	UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	KIS33878.1	Fructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	KIS34099.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	KIS33948.1	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (724 aa)
	KIS34100.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	KIS34102.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	KIS34104.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
	KIS33060.1	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
	KIS33065.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	rfbB	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (355 aa)
	rfbD	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (285 aa)
	rfbC	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (181 aa)
	rfbA	Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (299 aa)
	KIS32533.1	UDP-N-acetylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (375 aa)
	KIS32534.1	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (438 aa)
	KIS32576.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	KIS32677.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	KIS32724.1	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	KIS32069.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	KIS31594.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	KIS31494.1	Mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	KIS31495.1	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	KIS31216.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
	KIS31246.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
	KIS31280.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	KIS31247.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	KIS31132.1	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	KIS30772.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	KIS30639.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	KIS30641.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	KIS30642.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	KIS30684.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	KIS30644.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
	KIS30685.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	KIS30645.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (698 aa)
	KIS30686.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyltransferase 26 family. (238 aa)
	KIS30687.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
	KIS30688.1	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (373 aa)
	KIS30066.1	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	KIS30095.1	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	KIS30083.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
	KIS30085.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
	KIS29796.1	Protein CapI; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	KIS29696.1	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	KIS29697.1	Mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	KIS29581.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	galE	UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (336 aa)
	KIS29566.1	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)

Your Current Organism:

Novosphingobium sp. P6W

NCBI taxonomy Id: 1609758
Other names: N. sp. P6W

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KIS29566.1	KIS29581.1	TQ38_28050	TQ38_27560	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
KIS29566.1	KIS29696.1	TQ38_28050	TQ38_26685	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KIS29566.1	KIS29697.1	TQ38_28050	TQ38_26690	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
KIS29566.1	KIS30066.1	TQ38_28050	TQ38_24585	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
KIS29566.1	KIS30083.1	TQ38_28050	TQ38_24700	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
KIS29566.1	KIS30085.1	TQ38_28050	TQ38_24710	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
KIS29566.1	KIS30095.1	TQ38_28050	TQ38_24635	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
KIS29566.1	KIS30639.1	TQ38_28050	TQ38_21140	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
KIS29566.1	KIS30644.1	TQ38_28050	TQ38_21190	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
KIS29566.1	KIS30687.1	TQ38_28050	TQ38_21215	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
KIS29566.1	KIS30688.1	TQ38_28050	TQ38_21235	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family.	0.547
KIS29566.1	KIS31132.1	TQ38_28050	TQ38_19285	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphomannomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
KIS29566.1	KIS31494.1	TQ38_28050	TQ38_17135	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
KIS29566.1	KIS31495.1	TQ38_28050	TQ38_17140	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KIS29566.1	KIS32069.1	TQ38_28050	TQ38_12935	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
KIS29566.1	KIS32533.1	TQ38_28050	TQ38_09400	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-N-acetylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.	0.485
KIS29566.1	KIS32534.1	TQ38_28050	TQ38_09405	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.	0.486
KIS29566.1	KIS32677.1	TQ38_28050	TQ38_10295	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
KIS29566.1	KIS32724.1	TQ38_28050	TQ38_10595	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
KIS29566.1	KIS33060.1	TQ38_28050	TQ38_06235	Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912