(11 nodes) Mixed, incl. Methyltransferase domain, and Galactosyltransferase, C-terminal network (Novosphingobium sp. P6W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KIS30423.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	KIS30424.1	NodS family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	KIS30425.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	KIS30426.1	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	KIS30427.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	KIS30344.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	KIS30345.1	NodS family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	KIS30346.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	KIS30287.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
	KIS30272.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	KIS30273.1	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)

Your Current Organism:

Novosphingobium sp. P6W

NCBI taxonomy Id: 1609758
Other names: N. sp. P6W

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KIS30272.1	KIS30273.1	TQ38_23835	TQ38_23840	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
KIS30272.1	KIS30287.1	TQ38_23835	TQ38_23830	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KIS30272.1	KIS30344.1	TQ38_23835	TQ38_22830	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KIS30272.1	KIS30345.1	TQ38_23835	TQ38_22840	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	NodS family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.782
KIS30272.1	KIS30346.1	TQ38_23835	TQ38_22845	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
KIS30272.1	KIS30423.1	TQ38_23835	TQ38_22695	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
KIS30272.1	KIS30424.1	TQ38_23835	TQ38_22700	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	NodS family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KIS30272.1	KIS30425.1	TQ38_23835	TQ38_22710	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KIS30272.1	KIS30426.1	TQ38_23835	TQ38_22715	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
KIS30273.1	KIS30272.1	TQ38_23840	TQ38_23835	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.935
KIS30273.1	KIS30287.1	TQ38_23840	TQ38_23830	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
KIS30273.1	KIS30344.1	TQ38_23840	TQ38_22830	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.753
KIS30273.1	KIS30345.1	TQ38_23840	TQ38_22840	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NodS family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
KIS30273.1	KIS30346.1	TQ38_23840	TQ38_22845	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.810
KIS30273.1	KIS30423.1	TQ38_23840	TQ38_22695	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
KIS30273.1	KIS30424.1	TQ38_23840	TQ38_22700	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NodS family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
KIS30273.1	KIS30425.1	TQ38_23840	TQ38_22710	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
KIS30273.1	KIS30427.1	TQ38_23840	TQ38_22720	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
KIS30287.1	KIS30272.1	TQ38_23830	TQ38_23835	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KIS30287.1	KIS30273.1	TQ38_23830	TQ38_23840	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950