(4 nodes) Extracellular polysaccharide biosynthetic process network (Novosphingobium sp. P6W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rfbA	Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. (299 aa)
	KIS33679.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (744 aa)
	KIS33948.1	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (724 aa)
	KIS33213.1	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)

Your Current Organism:

Novosphingobium sp. P6W

NCBI taxonomy Id: 1609758
Other names: N. sp. P6W

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KIS33213.1	KIS33679.1	TQ38_07185	TQ38_02875	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
KIS33213.1	KIS33948.1	TQ38_07185	TQ38_04570	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
KIS33679.1	KIS33213.1	TQ38_02875	TQ38_07185	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
KIS33679.1	KIS33948.1	TQ38_02875	TQ38_04570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
KIS33948.1	KIS33213.1	TQ38_04570	TQ38_07185	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
KIS33948.1	KIS33679.1	TQ38_04570	TQ38_02875	Lipopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533