(4 nodes) SMP-30/Gluconolactonase/LRE-like region network (Novosphingobium sp. P6W)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KIS31003.1	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	KIS34033.1	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	KIS31252.1	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	KIS30561.1	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)

Your Current Organism:

Novosphingobium sp. P6W

NCBI taxonomy Id: 1609758
Other names: N. sp. P6W

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KIS30561.1	KIS31003.1	TQ38_22040	TQ38_19620	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KIS30561.1	KIS31252.1	TQ38_22040	TQ38_18000	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KIS31003.1	KIS30561.1	TQ38_19620	TQ38_22040	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KIS31003.1	KIS31252.1	TQ38_19620	TQ38_18000	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KIS31252.1	KIS30561.1	TQ38_18000	TQ38_22040	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KIS31252.1	KIS31003.1	TQ38_18000	TQ38_19620	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917