70 items (Methanobrevibacter sp. YE315) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMD16601.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (654 aa)
	AMD16602.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)
	AMD16603.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	AMD16610.1	UDP-N-acetyl-D-mannosamine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (412 aa)
	AMD16611.1	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AMD16612.1	Ribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	AMD16613.1	Ribonuclease inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)
	AMD16614.1	Glucose-1-phosphate thymidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	AMD16615.1	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (186 aa)
	AMD16616.1	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
	AMD16617.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (88 aa)
	AMD16618.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (93 aa)
	AMD16619.1	CDP-glycerol:glycerophosphate glycerophosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
	AMD16620.1	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	AMD16621.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	AMD16622.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AMD16623.1	UDP-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	AMD16804.1	Glucose-1-phosphate thymidylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	AMD16809.1	Phosphoglucomutase; Catalyzes the interconversion of alpha-D-mannose 1-phosphate to alpha-D-mannose 6-phosphate and alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphohexose mutase family. (454 aa)
	AMD16825.1	Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (399 aa)
	AMD18413.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (622 aa)
	AMD17151.1	GDP-D-mannose dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	AMD17173.1	Nucleotide sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AMD17243.1	UTP--glucose-1-phosphate uridylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	AMD17244.1	Nucleoside-diphosphate sugar epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AMD17284.1	UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AMD17289.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	AMD17388.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (255 aa)
	AMD17389.1	Adenine nucleotide alpha hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	AMD17390.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
	gpsA	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (322 aa)
	AMD17392.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	AMD17393.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (795 aa)
	AMD17394.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
	AMD17395.1	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	AMD18445.1	Polysaccharide synthesis protein GtrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	AMD17396.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
	AMD17397.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	AMD17398.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (870 aa)
	AMD17399.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (741 aa)
	AMD17404.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	AMD17482.1	ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (325 aa)
	AMD17678.1	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	AMD17740.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	AMD17764.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
	AMD17765.1	UDP-N-acetylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
	AMD17947.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	AMD17963.1	UDP-N-acetylglucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	AMD18071.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. (429 aa)
	AMD18072.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)
	AMD18074.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	AMD18121.1	Inositol-3-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)
	AMD18122.1	Glycosyl transferase GT4 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	AMD18124.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	AMD18125.1	Glycosyl transferase GT4 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	AMD18126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (511 aa)
	AMD18127.1	Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
	AMD18128.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	AMD18129.1	Sialyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
	AMD18130.1	Acetylneuraminic acid synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	AMD18131.1	Cytidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (554 aa)
	AMD18132.1	Phosphoglycolate phosphatase; Catalyzes the dephosphorylation of 2-phosphoglycolate. (234 aa)
	AMD18133.1	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	AMD18211.1	Aminotransferase DegT; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DegT/DnrJ/EryC1 family. (368 aa)
	AMD18270.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AMD18486.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	AMD18273.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	AMD18487.1	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	AMD18274.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (172 aa)
	AMD18488.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)

Your Current Organism:

Methanobrevibacter sp. YE315

NCBI taxonomy Id: 1609968
Other names: M. sp. YE315

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMD16601.1	AMD16602.1	TL18_00245	TL18_00250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
AMD16601.1	AMD16603.1	TL18_00245	TL18_00255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AMD16601.1	AMD16621.1	TL18_00245	TL18_00345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
AMD16601.1	AMD16623.1	TL18_00245	TL18_00355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
AMD16601.1	AMD17284.1	TL18_00245	TL18_04140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
AMD16601.1	AMD17393.1	TL18_00245	TL18_04780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AMD16601.1	AMD17398.1	TL18_00245	TL18_04810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AMD16601.1	AMD18072.1	TL18_00245	TL18_08610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
AMD16601.1	AMD18273.1	TL18_00245	TL18_09750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AMD16601.1	AMD18413.1	TL18_00245	TL18_01480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AMD16601.1	AMD18487.1	TL18_00245	TL18_09755	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Teichoic acid ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
AMD16602.1	AMD16601.1	TL18_00250	TL18_00245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
AMD16602.1	AMD16603.1	TL18_00250	TL18_00255	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
AMD16602.1	AMD16620.1	TL18_00250	TL18_00340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
AMD16602.1	AMD16623.1	TL18_00250	TL18_00355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-phosphate glucose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
AMD16602.1	AMD17284.1	TL18_00250	TL18_04140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
AMD16602.1	AMD17398.1	TL18_00250	TL18_04810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
AMD16602.1	AMD18072.1	TL18_00250	TL18_08610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AMD16602.1	AMD18273.1	TL18_00250	TL18_09750	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
AMD16602.1	AMD18413.1	TL18_00250	TL18_01480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405