8 items (Methanobrevibacter sp. YE315) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gpsA	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (322 aa)
	AMD17392.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	AMD17393.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (795 aa)
	AMD17394.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
	AMD17395.1	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	AMD18445.1	Polysaccharide synthesis protein GtrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
	AMD17396.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
	AMD17397.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)

Your Current Organism:

Methanobrevibacter sp. YE315

NCBI taxonomy Id: 1609968
Other names: M. sp. YE315

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMD17392.1	AMD17393.1	TL18_04775	TL18_04780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AMD17392.1	AMD17394.1	TL18_04775	TL18_04785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AMD17392.1	gpsA	TL18_04775	TL18_04770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.828
AMD17393.1	AMD17392.1	TL18_04780	TL18_04775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
AMD17393.1	AMD17394.1	TL18_04780	TL18_04785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AMD17393.1	AMD17395.1	TL18_04780	TL18_04790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
AMD17393.1	AMD17396.1	TL18_04780	TL18_04800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
AMD17393.1	AMD18445.1	TL18_04780	TL18_04795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide synthesis protein GtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
AMD17393.1	gpsA	TL18_04780	TL18_04770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.552
AMD17394.1	AMD17392.1	TL18_04785	TL18_04775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.802
AMD17394.1	AMD17393.1	TL18_04785	TL18_04780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
AMD17394.1	AMD17395.1	TL18_04785	TL18_04790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
AMD17394.1	AMD17396.1	TL18_04785	TL18_04800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
AMD17394.1	AMD17397.1	TL18_04785	TL18_04805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
AMD17394.1	AMD18445.1	TL18_04785	TL18_04795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide synthesis protein GtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AMD17394.1	gpsA	TL18_04785	TL18_04770	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.546
AMD17395.1	AMD17393.1	TL18_04790	TL18_04780	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
AMD17395.1	AMD17394.1	TL18_04790	TL18_04785	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
AMD17395.1	AMD17396.1	TL18_04790	TL18_04800	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.848
AMD17395.1	AMD17397.1	TL18_04790	TL18_04805	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597