(14 nodes) Mixed, incl. FtsX-like permease family, and MacB, ATP-binding domain network (Methanobrevibacter sp. YE315)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMD16841.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	AMD16842.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	AMD16997.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (158 aa)
	AMD17980.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (879 aa)
	AMD17981.1	Transcriptional repressor SmtB; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	AMD17982.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (149 aa)
	AMD17983.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	AMD17984.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (149 aa)
	AMD17985.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
	AMD17986.1	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology. (752 aa)
	AMD17988.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (73 aa)
	AMD17989.1	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology. (756 aa)
	AMD17990.1	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	AMD18493.1	ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology. (831 aa)

Your Current Organism:

Methanobrevibacter sp. YE315

NCBI taxonomy Id: 1609968
Other names: M. sp. YE315

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMD16841.1	AMD16842.1	TL18_01565	TL18_01570	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AMD16841.1	AMD17990.1	TL18_01565	TL18_08090	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
AMD16842.1	AMD16841.1	TL18_01570	TL18_01565	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AMD16842.1	AMD16997.1	TL18_01570	TL18_02535	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.842
AMD16842.1	AMD17986.1	TL18_01570	TL18_08070	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
AMD16842.1	AMD17989.1	TL18_01570	TL18_08085	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
AMD16997.1	AMD16842.1	TL18_02535	TL18_01570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
AMD16997.1	AMD17990.1	TL18_02535	TL18_08090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Macrolide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.842
AMD17980.1	AMD17981.1	TL18_08040	TL18_08045	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional repressor SmtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AMD17980.1	AMD17982.1	TL18_08040	TL18_08050	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.483
AMD17980.1	AMD17983.1	TL18_08040	TL18_08055	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.481
AMD17980.1	AMD17984.1	TL18_08040	TL18_08060	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.434
AMD17980.1	AMD17985.1	TL18_08040	TL18_08065	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
AMD17980.1	AMD18493.1	TL18_08040	TL18_10005	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
AMD17981.1	AMD17980.1	TL18_08045	TL18_08040	Transcriptional repressor SmtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
AMD17981.1	AMD17982.1	TL18_08045	TL18_08050	Transcriptional repressor SmtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.510
AMD17981.1	AMD17983.1	TL18_08045	TL18_08055	Transcriptional repressor SmtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
AMD17981.1	AMD17984.1	TL18_08045	TL18_08060	Transcriptional repressor SmtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.458
AMD17981.1	AMD17985.1	TL18_08045	TL18_08065	Transcriptional repressor SmtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
AMD17981.1	AMD17986.1	TL18_08045	TL18_08070	Transcriptional repressor SmtB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell division protein FtsX; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419