Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMD17036.1 | AMD17622.1 | TL18_02750 | TL18_06075 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.450 |
| AMD17036.1 | AMD17880.1 | TL18_02750 | TL18_07495 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.842 |
| AMD17036.1 | AMD18227.1 | TL18_02750 | TL18_09475 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.932 |
| AMD17036.1 | flpA | TL18_02750 | TL18_09480 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.826 |
| AMD17036.1 | nop10 | TL18_02750 | TL18_09915 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosome biogenesis protein Nop10; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. | 0.998 |
| AMD17036.1 | truB | TL18_02750 | TL18_07345 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | H/ACA RNA-protein complex component Cbf5p; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.999 |
| AMD17622.1 | AMD17036.1 | TL18_06075 | TL18_02750 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.450 |
| AMD17622.1 | AMD17880.1 | TL18_06075 | TL18_07495 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.593 |
| AMD17622.1 | AMD18148.1 | TL18_06075 | TL18_09045 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Similar to yeast Dim2p protein that is essential for 40S ribosomal subunit; structural studies show binding to 3' end of 16S rRNA in complex with archaeal IF2 alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.995 |
| AMD17622.1 | AMD18227.1 | TL18_06075 | TL18_09475 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.761 |
| AMD17622.1 | csl4 | TL18_06075 | TL18_00630 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.561 |
| AMD17622.1 | rrp4 | TL18_06075 | TL18_06250 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. | 0.563 |
| AMD17622.1 | rrp41 | TL18_06075 | TL18_06245 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Exonuclease; Catalytic component of the exosome, which is a complex involved in RNA degradation. Has 3'->5' exoribonuclease activity. Can also synthesize heteropolymeric RNA-tails. | 0.463 |
| AMD17622.1 | truB | TL18_06075 | TL18_07345 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | H/ACA RNA-protein complex component Cbf5p; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.680 |
| AMD17880.1 | AMD17036.1 | TL18_07495 | TL18_02750 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.842 |
| AMD17880.1 | AMD17622.1 | TL18_07495 | TL18_06075 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.593 |
| AMD17880.1 | AMD18148.1 | TL18_07495 | TL18_09045 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Similar to yeast Dim2p protein that is essential for 40S ribosomal subunit; structural studies show binding to 3' end of 16S rRNA in complex with archaeal IF2 alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.580 |
| AMD17880.1 | AMD18227.1 | TL18_07495 | TL18_09475 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.467 |
| AMD17880.1 | csl4 | TL18_07495 | TL18_00630 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Helpful for the interaction of the exosome with A-poor RNAs. | 0.500 |
| AMD17880.1 | rrp4 | TL18_07495 | TL18_06250 | RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | RNA-binding protein; Non-catalytic component of the exosome, which is a complex involved in RNA degradation. Increases the RNA binding and the efficiency of RNA degradation. Confers strong poly(A) specificity to the exosome. | 0.420 |
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