Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMD16579.1 | AMD17622.1 | TL18_00130 | TL18_06075 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.406 |
| AMD16579.1 | AMD17784.1 | TL18_00130 | TL18_06995 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.708 |
| AMD16579.1 | AMD18148.1 | TL18_00130 | TL18_09045 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | Similar to yeast Dim2p protein that is essential for 40S ribosomal subunit; structural studies show binding to 3' end of 16S rRNA in complex with archaeal IF2 alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.430 |
| AMD16579.1 | AMD18222.1 | TL18_00130 | TL18_09450 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.757 |
| AMD16579.1 | tfe | TL18_00130 | TL18_01470 | Cell division control protein Cdc6; Involved in regulation of DNA replication. | Transcription factor; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to [...] | 0.423 |
| AMD16790.1 | AMD17784.1 | TL18_01275 | TL18_06995 | ATPase AAA; Involved in regulation of DNA replication. | DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.708 |
| AMD16790.1 | AMD18222.1 | TL18_01275 | TL18_09450 | ATPase AAA; Involved in regulation of DNA replication. | DNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.741 |
| AMD16790.1 | tfe | TL18_01275 | TL18_01470 | ATPase AAA; Involved in regulation of DNA replication. | Transcription factor; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation complexes. Seems to [...] | 0.549 |
| AMD17036.1 | AMD17622.1 | TL18_02750 | TL18_06075 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.450 |
| AMD17036.1 | AMD17998.1 | TL18_02750 | TL18_08135 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.612 |
| AMD17036.1 | nop10 | TL18_02750 | TL18_09915 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosome biogenesis protein Nop10; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. | 0.998 |
| AMD17222.1 | AMD18466.1 | TL18_03800 | TL18_07230 | ADP-ribosylglycohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Crystallin; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.440 |
| AMD17268.1 | AMD17622.1 | TL18_04055 | TL18_06075 | Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome. | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.723 |
| AMD17268.1 | AMD17657.1 | TL18_04055 | TL18_06255 | Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome. | Shwachman#Bodian#Diamond syndrome protein family; SBDS; similar to eukaryotic proteins involved in RNA metabolism or binding; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.780 |
| AMD17268.1 | AMD17998.1 | TL18_04055 | TL18_08135 | Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome. | GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.963 |
| AMD17268.1 | AMD18148.1 | TL18_04055 | TL18_09045 | Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome. | Similar to yeast Dim2p protein that is essential for 40S ribosomal subunit; structural studies show binding to 3' end of 16S rRNA in complex with archaeal IF2 alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.891 |
| AMD17622.1 | AMD16579.1 | TL18_06075 | TL18_00130 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Cell division control protein Cdc6; Involved in regulation of DNA replication. | 0.406 |
| AMD17622.1 | AMD17036.1 | TL18_06075 | TL18_02750 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.450 |
| AMD17622.1 | AMD17268.1 | TL18_06075 | TL18_04055 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome. | 0.723 |
| AMD17622.1 | AMD17998.1 | TL18_06075 | TL18_08135 | PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.597 |
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