Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMD16764.1 | eif6 | TL18_01130 | TL18_01160 | Ribosome assembly protein YhbY; Derived by automated computational analysis using gene prediction method: Protein Homology. | Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. | 0.564 |
| AMD16764.1 | rrmJ | TL18_01130 | TL18_02295 | Ribosome assembly protein YhbY; Derived by automated computational analysis using gene prediction method: Protein Homology. | 23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.424 |
| AMD16950.1 | AMD17036.1 | TL18_02275 | TL18_02750 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.547 |
| AMD16950.1 | AMD17268.1 | TL18_02275 | TL18_04055 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome. | 0.726 |
| AMD16950.1 | AMD17657.1 | TL18_02275 | TL18_06255 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Shwachman#Bodian#Diamond syndrome protein family; SBDS; similar to eukaryotic proteins involved in RNA metabolism or binding; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.491 |
| AMD16950.1 | AMD17928.1 | TL18_02275 | TL18_07750 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribonuclease VapC; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.724 |
| AMD16950.1 | AMD17998.1 | TL18_02275 | TL18_08135 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.982 |
| AMD16950.1 | AMD18148.1 | TL18_02275 | TL18_09045 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Similar to yeast Dim2p protein that is essential for 40S ribosomal subunit; structural studies show binding to 3' end of 16S rRNA in complex with archaeal IF2 alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.843 |
| AMD16950.1 | eif6 | TL18_02275 | TL18_01160 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. | 0.956 |
| AMD16950.1 | flpA | TL18_02275 | TL18_09480 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.407 |
| AMD16950.1 | rsmA | TL18_02275 | TL18_00775 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.407 |
| AMD17036.1 | AMD16950.1 | TL18_02750 | TL18_02275 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.547 |
| AMD17036.1 | AMD17998.1 | TL18_02750 | TL18_08135 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.612 |
| AMD17036.1 | flpA | TL18_02750 | TL18_09480 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Fibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. | 0.826 |
| AMD17036.1 | nop10 | TL18_02750 | TL18_09915 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ribosome biogenesis protein Nop10; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. | 0.998 |
| AMD17036.1 | rrmJ | TL18_02750 | TL18_02295 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.426 |
| AMD17036.1 | rsmA | TL18_02750 | TL18_00775 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. | 0.402 |
| AMD17268.1 | AMD16950.1 | TL18_04055 | TL18_02275 | Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.726 |
| AMD17268.1 | AMD17657.1 | TL18_04055 | TL18_06255 | Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome. | Shwachman#Bodian#Diamond syndrome protein family; SBDS; similar to eukaryotic proteins involved in RNA metabolism or binding; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.780 |
| AMD17268.1 | AMD17928.1 | TL18_04055 | TL18_07750 | Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome. | Ribonuclease VapC; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.883 |
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