12 items (Methanobrevibacter sp. YE315) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMD16622.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AMD16669.1	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	AMD17039.1	Teichoic acid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (631 aa)
	AMD17395.1	Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	AMD17764.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
	AMD17947.1	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	AMD18125.1	Glycosyl transferase GT4 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	AMD18128.1	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	AMD18129.1	Sialyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
	AMD18363.1	Multidrug transporter MatE; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
	AMD16611.1	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AMD16621.1	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)

Your Current Organism:

Methanobrevibacter sp. YE315

NCBI taxonomy Id: 1609968
Other names: M. sp. YE315

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMD16611.1	AMD16621.1	TL18_00295	TL18_00345	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AMD16611.1	AMD16622.1	TL18_00295	TL18_00350	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
AMD16611.1	AMD17764.1	TL18_00295	TL18_06880	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
AMD16611.1	AMD18128.1	TL18_00295	TL18_08940	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AMD16611.1	AMD18363.1	TL18_00295	TL18_10300	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug transporter MatE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523
AMD16621.1	AMD16611.1	TL18_00345	TL18_00295	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
AMD16621.1	AMD16622.1	TL18_00345	TL18_00350	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
AMD16621.1	AMD17764.1	TL18_00345	TL18_06880	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AMD16622.1	AMD16611.1	TL18_00350	TL18_00295	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
AMD16622.1	AMD16621.1	TL18_00350	TL18_00345	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
AMD16622.1	AMD17764.1	TL18_00350	TL18_06880	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AMD16622.1	AMD17947.1	TL18_00350	TL18_07865	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AMD17039.1	AMD17764.1	TL18_02765	TL18_06880	Teichoic acid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AMD17039.1	AMD18125.1	TL18_02765	TL18_08925	Teichoic acid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase GT4 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AMD17764.1	AMD16611.1	TL18_06880	TL18_00295	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
AMD17764.1	AMD16621.1	TL18_06880	TL18_00345	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AMD17764.1	AMD16622.1	TL18_06880	TL18_00350	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
AMD17764.1	AMD17039.1	TL18_06880	TL18_02765	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Teichoic acid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
AMD17764.1	AMD17947.1	TL18_06880	TL18_07865	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
AMD17764.1	AMD18125.1	TL18_06880	TL18_08925	Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase GT4 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627