STRINGSTRING
AMD17593.1 AMD17593.1 AMD17615.1 AMD17615.1 AMD17657.1 AMD17657.1 AMD17667.1 AMD17667.1 AMD17668.1 AMD17668.1 AMD17764.1 AMD17764.1 AMD17848.1 AMD17848.1 AMD17928.1 AMD17928.1 AMD17947.1 AMD17947.1 AMD17950.1 AMD17950.1 AMD17998.1 AMD17998.1 AMD18045.1 AMD18045.1 prf1 prf1 AMD18125.1 AMD18125.1 AMD18128.1 AMD18128.1 AMD18129.1 AMD18129.1 AMD18148.1 AMD18148.1 top6B top6B top6A top6A AMD18482.1 AMD18482.1 flpA flpA AMD18260.1 AMD18260.1 AMD18488.1 AMD18488.1 nop10 nop10 AMD18348.1 AMD18348.1 AMD18363.1 AMD18363.1 albA albA AMD16611.1 AMD16611.1 AMD16619.1 AMD16619.1 AMD16621.1 AMD16621.1 AMD16622.1 AMD16622.1 AMD16669.1 AMD16669.1 rsmA rsmA topA topA AMD16764.1 AMD16764.1 eif6 eif6 AMD16822.1 AMD16822.1 ftsZ ftsZ AMD16861.1 AMD16861.1 AMD16927.1 AMD16927.1 tfb tfb AMD16950.1 AMD16950.1 AMD16952.1 AMD16952.1 rrmJ rrmJ AMD16959.1 AMD16959.1 AMD17003.1 AMD17003.1 AMD17036.1 AMD17036.1 tfb-2 tfb-2 AMD17039.1 AMD17039.1 AMD17058.1 AMD17058.1 AMD17116.1 AMD17116.1 AMD17177.1 AMD17177.1 AMD17186.1 AMD17186.1 AMD17235.1 AMD17235.1 AMD17237.1 AMD17237.1 AMD17268.1 AMD17268.1 AMD17365.1 AMD17365.1 AMD17393.1 AMD17393.1 AMD17394.1 AMD17394.1 AMD17395.1 AMD17395.1 cas2 cas2 cas1 cas1 AMD17436.1 AMD17436.1 AMD17468.1 AMD17468.1 AMD17472.1 AMD17472.1 AMD17482.1 AMD17482.1 AMD17501.1 AMD17501.1 AMD17539.1 AMD17539.1 AMD17547.1 AMD17547.1 AMD17551.1 AMD17551.1 AMD17588.1 AMD17588.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AMD17593.1RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
AMD17615.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
AMD17657.1Shwachman#Bodian#Diamond syndrome protein family; SBDS; similar to eukaryotic proteins involved in RNA metabolism or binding; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
AMD17667.1Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
AMD17668.1Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
AMD17764.1Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
AMD17848.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
AMD17928.1Ribonuclease VapC; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
AMD17947.1Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
AMD17950.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (691 aa)
AMD17998.1GTP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
AMD18045.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the small heat shock protein (HSP20) family. (200 aa)
prf1Peptide chain release factor 1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. (414 aa)
AMD18125.1Glycosyl transferase GT4 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
AMD18128.1Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
AMD18129.1Sialyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
AMD18148.1Similar to yeast Dim2p protein that is essential for 40S ribosomal subunit; structural studies show binding to 3' end of 16S rRNA in complex with archaeal IF2 alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
top6BDNA topoisomerase VI subunit B; Relaxes both positive and negative superturns and exhibits a strong decatenase activity. (567 aa)
top6ADNA topoisomerase VI subunit A; Relaxes both positive and negative superturns and exhibits a strong decatenase activity; Belongs to the TOP6A family. (364 aa)
AMD18482.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)
flpAFibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (213 aa)
AMD18260.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (642 aa)
AMD18488.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)
nop10Ribosome biogenesis protein Nop10; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. (55 aa)
AMD18348.1Hef nuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (773 aa)
AMD18363.1Multidrug transporter MatE; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
albADNA/RNA-binding protein albA; Binds double-stranded DNA tightly but without sequence specificity. It is distributed uniformly and abundantly on the chromosome, suggesting a role in chromatin architecture. However, it does not significantly compact DNA. Binds rRNA and mRNA in vivo. May play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes; Belongs to the histone-like Alba family. (91 aa)
AMD16611.1Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
AMD16619.1CDP-glycerol:glycerophosphate glycerophosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
AMD16621.1Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
AMD16622.1Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
AMD16669.1DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
rsmA16S rRNA methyltransferase; Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily. (290 aa)
topADNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (718 aa)
AMD16764.1Ribosome assembly protein YhbY; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)
eif6Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (224 aa)
AMD16822.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (94 aa)
ftsZCell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (378 aa)
AMD16861.1ATPase; Originally found to be an inhibitor of the antiviral RNase-L in human cells; contains ABC-type nucleotide binding domains; putatively functions in RNA maturation; Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)
AMD16927.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
tfbTranscription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). (306 aa)
AMD16950.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
AMD16952.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the MCM family. (668 aa)
rrmJ23S rRNA methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. (210 aa)
AMD16959.1ATP-dependent helicase; Hel112; monomeric form of the enzyme from Sulfolobus shows 3'-5' ATP-dependent helicase activity; Derived by automated computational analysis using gene prediction method: Protein Homology. (865 aa)
AMD17003.1Lactaldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (470 aa)
AMD17036.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
tfb-2Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter. Also responsible for recruiting RNA polymerase II to the pre-initiation complex (DNA-TBP-TFIIB). (264 aa)
AMD17039.1Teichoic acid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (631 aa)
AMD17058.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
AMD17116.1phospho-N-acetylmuramoyl-pentapeptide- transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
AMD17177.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (726 aa)
AMD17186.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1640 aa)
AMD17235.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
AMD17237.1ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
AMD17268.1Ribonucleotide-diphosphate reductase subunit beta; Probably involved in the biogenesis of the ribosome. (161 aa)
AMD17365.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1002 aa)
AMD17393.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (795 aa)
AMD17394.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (794 aa)
AMD17395.1Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
cas2CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (91 aa)
cas1CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (331 aa)
AMD17436.1Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
AMD17468.1Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
AMD17472.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
AMD17482.1ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (325 aa)
AMD17501.1Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
AMD17539.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (814 aa)
AMD17547.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)
AMD17551.1Ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis; Belongs to the TSR3 family. (177 aa)
AMD17588.1Ribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
Your Current Organism:
Methanobrevibacter sp. YE315
NCBI taxonomy Id: 1609968
Other names: M. sp. YE315
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