Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AMD17299.1 | surE | TL18_04230 | TL18_04990 | NudC; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.927 |
| AMD17299.1 | surE-2 | TL18_04230 | TL18_10380 | NudC; Derived by automated computational analysis using gene prediction method: Protein Homology. | Stationary phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.926 |
| AMD18229.1 | AMD18230.1 | TL18_09485 | TL18_09490 | Phosphopantothenoylcysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphopantothenoylcysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AMD18230.1 | AMD18229.1 | TL18_09490 | TL18_09485 | Phosphopantothenoylcysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Phosphopantothenoylcysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AMD18315.1 | AMD18316.1 | TL18_10015 | TL18_10020 | Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0107 family. | 0.859 |
| AMD18316.1 | AMD18315.1 | TL18_10020 | TL18_10015 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0107 family. | Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.859 |
| AMD18316.1 | AMD18351.1 | TL18_10020 | TL18_10225 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0107 family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.978 |
| AMD18351.1 | AMD18316.1 | TL18_10225 | TL18_10020 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0107 family. | 0.978 |
| AMD18444.1 | pan | TL18_04690 | TL18_03225 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-20S proteasome associa [...] | 0.644 |
| AMD18444.1 | psmA | TL18_04690 | TL18_06260 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.881 |
| AMD18444.1 | psmB | TL18_04690 | TL18_09430 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Proteasome subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.899 |
| pan | AMD18444.1 | TL18_03225 | TL18_04690 | Nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-20S proteasome associa [...] | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.644 |
| pan | psmA | TL18_03225 | TL18_06260 | Nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-20S proteasome associa [...] | Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.982 |
| pan | psmB | TL18_03225 | TL18_09430 | Nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-20S proteasome associa [...] | Proteasome subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.970 |
| psmA | AMD18444.1 | TL18_06260 | TL18_04690 | Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.881 |
| psmA | pan | TL18_06260 | TL18_03225 | Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | Nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-20S proteasome associa [...] | 0.982 |
| psmA | psmB | TL18_06260 | TL18_09430 | Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | Proteasome subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.985 |
| psmB | AMD18444.1 | TL18_09430 | TL18_04690 | Proteasome subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.899 |
| psmB | pan | TL18_09430 | TL18_03225 | Proteasome subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | Nucleotidase; ATPase which is responsible for recognizing, binding, unfolding and translocation of substrate proteins into the archaeal 20S proteasome core particle. Is essential for opening the gate of the 20S proteasome via an interaction with its C-terminus, thereby allowing substrate entry and access to the site of proteolysis. Thus, the C- termini of the proteasomal ATPase function like a 'key in a lock' to induce gate opening and therefore regulate proteolysis. Unfolding activity requires energy from ATP hydrolysis, whereas ATP binding alone promotes ATPase-20S proteasome associa [...] | 0.970 |
| psmB | psmA | TL18_09430 | TL18_06260 | Proteasome subunit beta; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | Proteasome subunit alpha; Component of the proteasome core, a large protease complex with broad specificity involved in protein degradation. | 0.985 |
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