(12 nodes) Ribosomal subunit network (Methanobrevibacter sp. YE315)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl31e	50S ribosomal protein L31; One of the proteins encircling the polypeptide exit tunnel in the ribozyme; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribosomal protein L31e family. (81 aa)
	rps3ae	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family. (193 aa)
	AMD17191.1	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	rpl37ae	50S ribosomal protein L37; Binds to the 23S rRNA. (89 aa)
	rps24e	30S ribosomal protein S24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS24 family. (106 aa)
	rpl24e	50S ribosomal protein L24; Binds to the 23S rRNA. (53 aa)
	rps5	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (213 aa)
	rpl19e	50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (151 aa)
	AMD17862.1	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	rps19p	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (136 aa)
	rps17e	30S ribosomal protein S17e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family. (65 aa)
	rpl30e	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL30 family. (98 aa)

Your Current Organism:

Methanobrevibacter sp. YE315

NCBI taxonomy Id: 1609968
Other names: M. sp. YE315

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMD17191.1	AMD17862.1	TL18_03630	TL18_07405	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AMD17191.1	rpl19e	TL18_03630	TL18_07400	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
AMD17191.1	rpl24e	TL18_03630	TL18_06100	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Binds to the 23S rRNA.	0.999
AMD17191.1	rpl30e	TL18_03630	TL18_08725	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL30 family.	0.999
AMD17191.1	rpl31e	TL18_03630	TL18_01155	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; One of the proteins encircling the polypeptide exit tunnel in the ribozyme; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribosomal protein L31e family.	0.999
AMD17191.1	rpl37ae	TL18_03630	TL18_04050	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L37; Binds to the 23S rRNA.	0.999
AMD17191.1	rps17e	TL18_03630	TL18_07850	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
AMD17191.1	rps19p	TL18_03630	TL18_07470	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
AMD17191.1	rps24e	TL18_03630	TL18_06055	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
AMD17191.1	rps3ae	TL18_03630	TL18_01310	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
AMD17191.1	rps5	TL18_03630	TL18_07390	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy.	0.999
AMD17862.1	AMD17191.1	TL18_07405	TL18_03630	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AMD17862.1	rpl19e	TL18_07405	TL18_07400	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
AMD17862.1	rpl24e	TL18_07405	TL18_06100	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Binds to the 23S rRNA.	0.999
AMD17862.1	rpl30e	TL18_07405	TL18_08725	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL30 family.	0.999
AMD17862.1	rpl31e	TL18_07405	TL18_01155	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L31; One of the proteins encircling the polypeptide exit tunnel in the ribozyme; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribosomal protein L31e family.	0.999
AMD17862.1	rpl37ae	TL18_07405	TL18_04050	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L37; Binds to the 23S rRNA.	0.999
AMD17862.1	rps17e	TL18_07405	TL18_07850	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S17e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family.	0.999
AMD17862.1	rps19p	TL18_07405	TL18_07470	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
AMD17862.1	rps24e	TL18_07405	TL18_06055	50S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999