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rpl24e rpl24e rpl44e rpl44e nop10 nop10 flpA flpA AMD18227.1 AMD18227.1 AMD18148.1 AMD18148.1 rpl30e rpl30e rps17e rps17e AMD17928.1 AMD17928.1 rps19p rps19p rps3 rps3 AMD17871.1 AMD17871.1 rnp1 rnp1 AMD17862.1 AMD17862.1 rpl19e rpl19e rps5 rps5 rpl34e rpl34e truB truB rps4 rps4 AMD17776.1 AMD17776.1 srp19 srp19 AMD17740.1 AMD17740.1 rnp3 rnp3 rnp2 rnp2 rpl7ae rpl7ae AMD17622.1 AMD17622.1 rps24e rps24e AMD17595.1 AMD17595.1 rpl37ae rpl37ae AMD17191.1 AMD17191.1 AMD17036.1 AMD17036.1 rps3ae rps3ae eif6 eif6 rpl31e rpl31e srp54 srp54
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl24e50S ribosomal protein L24; Binds to the 23S rRNA. (53 aa)
rpl44e50S ribosomal protein L44; Binds to the 23S rRNA. (92 aa)
nop10Ribosome biogenesis protein Nop10; Involved in ribosome biogenesis; more specifically in 18S rRNA pseudouridylation and in cleavage of pre-rRNA. (55 aa)
flpAFibrillarin; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family. (213 aa)
AMD18227.1ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)
AMD18148.1Similar to yeast Dim2p protein that is essential for 40S ribosomal subunit; structural studies show binding to 3' end of 16S rRNA in complex with archaeal IF2 alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
rpl30e50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL30 family. (98 aa)
rps17e30S ribosomal protein S17e; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS17 family. (65 aa)
AMD17928.1Ribonuclease VapC; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
rps19p30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (136 aa)
rps330S ribosomal protein S3; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (252 aa)
AMD17871.1Translation initiation factor Sui1; In yeast this protein is involved in start site selection during the initiation of translation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SUI1 family. (112 aa)
rnp1Ribonuclease P protein component 1; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 1 family. (92 aa)
AMD17862.150S ribosomal protein L32; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
rpl19e50S ribosomal protein L19; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (151 aa)
rps530S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy. (213 aa)
rpl34e50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eL34 family. (88 aa)
truBH/ACA RNA-protein complex component Cbf5p; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. (321 aa)
rps430S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (179 aa)
AMD17776.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
srp19Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP. (89 aa)
AMD17740.1Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
rnp3Ribonuclease P; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 3 family. (236 aa)
rnp2Ribonuclease P; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends; Belongs to the eukaryotic/archaeal RNase P protein component 2 family. (118 aa)
rpl7ae50S ribosomal protein L7; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (122 aa)
AMD17622.1PilT domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
rps24e30S ribosomal protein S24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS24 family. (106 aa)
AMD17595.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
rpl37ae50S ribosomal protein L37; Binds to the 23S rRNA. (89 aa)
AMD17191.150S ribosomal protein L15e; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
AMD17036.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
rps3ae30S ribosomal protein S3Ae; The function for this protein is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the eukaryotic ribosomal protein eS1 family. (193 aa)
eif6Translation initiation factor IF-6; Binds to the 50S ribosomal subunit and prevents its association with the 30S ribosomal subunit to form the 70S initiation complex. (224 aa)
rpl31e50S ribosomal protein L31; One of the proteins encircling the polypeptide exit tunnel in the ribozyme; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribosomal protein L31e family. (81 aa)
srp54Signal recognition particle; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily. (449 aa)
Your Current Organism:
Methanobrevibacter sp. YE315
NCBI taxonomy Id: 1609968
Other names: M. sp. YE315
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