(35 nodes) Transport network (Methanobrevibacter sp. YE315)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMD16589.1	Potassium channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	secG	Preprotein translocase subunit SecG; Involved in protein export. The function of the beta subunit is unknown, but it may be involved in stabilization of the trimeric complex. (53 aa)
	AMD16722.1	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	AMD16811.1	Membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily. (210 aa)
	secE	Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. (59 aa)
	AMD16906.1	ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system. (279 aa)
	AMD17023.1	ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family. (666 aa)
	AMD17024.1	ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase proteolipid subunit family. (161 aa)
	atpE	ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane. (203 aa)
	atpC	ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane. (384 aa)
	atpF	ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane. (105 aa)
	atpA	ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family. (580 aa)
	atpB	ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit. (463 aa)
	atpD	ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane. (228 aa)
	AMD17033.1	BioY protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	AMD17067.1	Indolepyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (630 aa)
	AMD18430.1	Molybdate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	nac	Nascent polypeptide-associated complex protein; Contacts the emerging nascent chain on the ribosome. Belongs to the NAC-alpha family. (116 aa)
	AMD17166.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the complex I 49 kDa subunit family. (374 aa)
	cbiM	Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import. (221 aa)
	cbiN	Cobalamin biosynthesis protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family. (95 aa)
	cbiO	Cobalt transporter ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (277 aa)
	AMD17305.1	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	AMD17401.1	Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	mntP	Membrane protein; Probably functions as a manganese efflux pump. Belongs to the MntP (TC 9.B.29) family. (184 aa)
	AMD17647.1	Ammonia channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	AMD17692.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	secY	Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (452 aa)
	AMD17967.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (285 aa)
	AMD17968.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	AMD17975.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	AMD17976.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	AMD18077.1	Amino acid carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
	AMD18167.1	Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AMD18366.1	Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)

Your Current Organism:

Methanobrevibacter sp. YE315

NCBI taxonomy Id: 1609968
Other names: M. sp. YE315

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMD16906.1	AMD17033.1	TL18_02005	TL18_02735	ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	BioY protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
AMD16906.1	cbiM	TL18_02005	TL18_03995	ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.990
AMD16906.1	cbiN	TL18_02005	TL18_04000	ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalamin biosynthesis protein CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.	0.905
AMD16906.1	cbiO	TL18_02005	TL18_04010	ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalt transporter ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.902
AMD17023.1	AMD17024.1	TL18_02680	TL18_02685	ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.	ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase proteolipid subunit family.	0.999
AMD17023.1	atpA	TL18_02680	TL18_02705	ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.	ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.999
AMD17023.1	atpB	TL18_02680	TL18_02710	ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.	ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.	0.999
AMD17023.1	atpC	TL18_02680	TL18_02695	ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.	ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AMD17023.1	atpD	TL18_02680	TL18_02715	ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.	ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AMD17023.1	atpE	TL18_02680	TL18_02690	ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.	ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AMD17023.1	atpF	TL18_02680	TL18_02700	ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.	ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AMD17024.1	AMD17023.1	TL18_02685	TL18_02680	ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase 116 kDa subunit family.	0.999
AMD17024.1	atpA	TL18_02685	TL18_02705	ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase subunit A; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal alpha chain is a catalytic subunit. Belongs to the ATPase alpha/beta chains family.	0.999
AMD17024.1	atpB	TL18_02685	TL18_02710	ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane. The archaeal beta chain is a regulatory subunit.	0.999
AMD17024.1	atpC	TL18_02685	TL18_02695	ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase subunit C; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AMD17024.1	atpD	TL18_02685	TL18_02715	ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AMD17024.1	atpE	TL18_02685	TL18_02690	ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AMD17024.1	atpF	TL18_02685	TL18_02700	ATP synthase subunit K; Produces ATP from ADP in the presence of a proton gradient across the membrane; the K subunit is a nonenzymatic component which binds the dimeric form by interacting with the G and E subunits; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the V-ATPase proteolipid subunit family.	ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.999
AMD17033.1	AMD16906.1	TL18_02735	TL18_02005	BioY protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	0.861
AMD17033.1	cbiO	TL18_02735	TL18_04010	BioY protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalt transporter ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.	0.861