STRINGSTRING
sdhA sdhA AMD16626.1 AMD16626.1 glyA glyA AMD16716.1 AMD16716.1 AMD18407.1 AMD18407.1 AMD16725.1 AMD16725.1 AMD16731.1 AMD16731.1 AMD16732.1 AMD16732.1 AMD16733.1 AMD16733.1 AMD16734.1 AMD16734.1 AMD16735.1 AMD16735.1 AMD16736.1 AMD16736.1 AMD16737.1 AMD16737.1 AMD16738.1 AMD16738.1 AMD16756.1 AMD16756.1 apgM apgM AMD16819.1 AMD16819.1 fbp fbp AMD18415.1 AMD18415.1 AMD16856.1 AMD16856.1 AMD16858.1 AMD16858.1 AMD16859.1 AMD16859.1 AMD16860.1 AMD16860.1 AMD16919.1 AMD16919.1 AMD16921.1 AMD16921.1 AMD16922.1 AMD16922.1 porA porA AMD18423.1 AMD18423.1 AMD16924.1 AMD16924.1 mer mer AMD17009.1 AMD17009.1 AMD17018.1 AMD17018.1 AMD17035.1 AMD17035.1 AMD17066.1 AMD17066.1 AMD17147.1 AMD17147.1 AMD17169.1 AMD17169.1 prs prs mch mch AMD17437.1 AMD17437.1 AMD17460.1 AMD17460.1 aroA aroA AMD17514.1 AMD17514.1 AMD17515.1 AMD17515.1 AMD17516.1 AMD17516.1 AMD17575.1 AMD17575.1 sucD sucD AMD17672.1 AMD17672.1 AMD17673.1 AMD17673.1 rpiA rpiA AMD17743.1 AMD17743.1 AMD17812.1 AMD17812.1 eno eno AMD17883.1 AMD17883.1 AMD17887.1 AMD17887.1 AMD17895.1 AMD17895.1 AMD17906.1 AMD17906.1 AMD17907.1 AMD17907.1 mtrA mtrA pgk pgk tpiA tpiA sucC sucC AMD18104.1 AMD18104.1 AMD18105.1 AMD18105.1 AMD18106.1 AMD18106.1 AMD18107.1 AMD18107.1 AMD18120.1 AMD18120.1 gap gap AMD18176.1 AMD18176.1 AMD18182.1 AMD18182.1 AMD18183.1 AMD18183.1 AMD18184.1 AMD18184.1 AMD18189.1 AMD18189.1 mtrG mtrG AMD18191.1 AMD18191.1 mtrA-2 mtrA-2 mtrB mtrB mtrC mtrC mtrD mtrD mtrE mtrE AMD18197.1 AMD18197.1 AMD18198.1 AMD18198.1 AMD18201.1 AMD18201.1 ftr ftr mtd mtd fae-hps fae-hps
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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sdhAPart of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology. (547 aa)
AMD16626.1Disulfide reductase; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). (661 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydromethanopterin (H4MPT) serving as the one-carbon carrier. Also exhibits a pteridine-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro- aldol mechanism; Belongs to the SHMT family. (423 aa)
AMD16716.16-phospho 3-hexuloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
AMD18407.1Formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
AMD16725.1Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
AMD16731.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
AMD16732.1tRNA CCA-pyrophosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
AMD16733.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
AMD16734.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)
AMD16735.1Formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)
AMD16736.1Formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
AMD16737.1Protein fwdA; Derived by automated computational analysis using gene prediction method: Protein Homology. (571 aa)
AMD16738.1Formylmethanofuran dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
AMD16756.1Haloacid dehalogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (588 aa)
apgMPhosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. (412 aa)
AMD16819.1Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
fbpFructose 1,6-bisphosphatase; Catalyzes two subsequent steps in gluconeogenesis: the aldol condensation of dihydroxyacetone phosphate (DHAP) and glyceraldehyde-3- phosphate (GA3P) to fructose-1,6-bisphosphate (FBP), and the dephosphorylation of FBP to fructose-6-phosphate (F6P). (365 aa)
AMD18415.1Methylenetetrahydromethanopterin dehydrogenase; Catalyzes the reduction of methenyltetrahydromethanopterin to methylenetetrahydromethanopterin; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
AMD16856.1Methylenetetrahydromethanopterin dehydrogenase; Catalyzes the reduction of methenyltetrahydromethanopterin to methylenetetrahydromethanopterin; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
AMD16858.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
AMD16859.1Formate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
AMD16860.1Methyl-viologen-reducing hydrogenase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
AMD16919.1Fumarate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (280 aa)
AMD16921.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
AMD16922.12-ketoisovalerate ferredoxin oxidoreductase; Catalyzes the coenzyme A-dependent oxidation of 3-methyl-2-oxobutanoate coupled to the reduction of ferredoxin producing S-(2-methylpropanoyl)-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
porAPyruvate ferredoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (381 aa)
AMD18423.1Pyruvate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)
AMD16924.1Pyruvate ferredoxin oxidoreductase; Catalyzes the ferredoxin-dependent oxidative decarboxylation of pyruvate to form acetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
merMethylene-tetrahydromethanopterin reductase; Catalyzes the reversible reduction of methylene-H(4)MPT to methyl-H(4)MPT; Belongs to the mer family. (318 aa)
AMD17009.1D-3-phosphoglycerate dehydrogenase; Catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (524 aa)
AMD17018.1Fumarate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
AMD17035.1Dimethylmenaquinone methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
AMD17066.1Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
AMD17147.1acetyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (554 aa)
AMD17169.1Formylmethanofuran--tetrahydromethanopterin formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
prsRibose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P). (304 aa)
mchN(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the reversible interconversion of 5-formyl-H(4)MPT to methenyl-H(4)MPT(+); Belongs to the MCH family. (323 aa)
AMD17437.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
AMD17460.1Malate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LDH/MDH superfamily. (323 aa)
aroAFructose-bisphosphate aldolase; Catalyzes a transaldol reaction between 6-deoxy-5- ketofructose 1-phosphate (DKFP) and L-aspartate semialdehyde (ASA) with an elimination of hydroxypyruvaldehyde phosphate to yield 2-amino-3,7- dideoxy-D-threo-hept-6-ulosonate (ADH). Plays a key role in an alternative pathway of the biosynthesis of 3-dehydroquinate (DHQ), which is involved in the canonical pathway for the biosynthesis of aromatic amino acids. (263 aa)
AMD17514.1Disulfide reductase; Part of a complex that catalyzes the reversible reduction of CoM-S-S-CoB to the thiol-coenzymes H-S-CoM (coenzyme M) and H-S-CoB (coenzyme B). (769 aa)
AMD17515.1Heterodisulfide reductase subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
AMD17516.1Heterodisulfide reductase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
AMD17575.1Phosphoglycerate mutase; Catalyzes the interconversion of 3-phosphoglycerate and 2-phosphoglycerate; this enzyme does not require the cofactor 2,3-bisphosphoglycerate as a phosphate donor; BPG-independent PGAM; aPGAM; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
sucDHypothetical protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (288 aa)
AMD17672.1Serine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
AMD17673.1Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
rpiARibose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (228 aa)
AMD17743.1acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
AMD17812.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pyruvate kinase family. (467 aa)
enoEnolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (414 aa)
AMD17883.1Pyruvate carboxylase subunit A; Catalyzes the ATP-dependent carboxylation of a covalently attached biotin and the transfer of the carboxyl group to pyruvate forming oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
AMD17887.1Fumarate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
AMD17895.1Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
AMD17906.1Disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
AMD17907.1Heterodisulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
mtrAHypothetical protein; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step; Belongs to the MtrA family. (186 aa)
pgkPhosphoglycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phosphoglycerate kinase family. (404 aa)
tpiATriosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (222 aa)
sucCsuccinyl-CoA synthetase subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (372 aa)
AMD18104.12-oxoglutarate ferredoxin oxidoreductase subunit gamma; Catalyzes the ferredoxin-dependent oxidative decarboxylation 2-oxoglutarate forming succinyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
AMD18105.12-oxoglutarate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
AMD18106.12-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (372 aa)
AMD18107.1Fumarate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
AMD18120.1Pyruvate carboxylase subunit B; Catalyzes the formation of oxaloacetate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology. (570 aa)
gapGlyceraldehyde-3-phosphate dehydrogenase; Catalyzes the formation of 3-phospho-D-glycerol phosphate from D-glyceraldehyde 3-phosphate in glycolysis; Derived by automated computational analysis using gene prediction method: Protein Homology. (338 aa)
AMD18176.1Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family. (758 aa)
AMD18182.1F420-nonreducing hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (475 aa)
AMD18183.1F420-nonreducing hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
AMD18184.1Methyl-viologen-reducing hydrogenase subunit delta; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
AMD18189.1Part of a complex that catalyzes the formation of methyl-coenzyme M and tetrahydromethanopterin from coenzyme M and methyl-tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step. MtrH catalyzes the transfer of the methyl group from methyl-tetrahydromethanopterin to the corrinoid prosthetic group of mtrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
mtrGTetrahydromethanopterin S-methyltransferase subunit G; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step. (78 aa)
AMD18191.1Tetrahydromethanopterin S-methyltransferase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa)
mtrA-2Tetrahydromethanopterin S-methyltransferase subunit A; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step; Belongs to the MtrA family. (238 aa)
mtrBTetrahydromethanopterin S-methyltransferase subunit B; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step. (109 aa)
mtrCTetrahydromethanopterin S-methyltransferase subunit C; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step. (271 aa)
mtrDTetrahydromethanopterin S-methyltransferase subunit D; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step. (230 aa)
mtrETetrahydromethanopterin S-methyltransferase subunit E; Part of a complex that catalyzes the formation of methyl- coenzyme M and tetrahydromethanopterin from coenzyme M and methyl- tetrahydromethanopterin. This is an energy-conserving, sodium-ion translocating step. (292 aa)
AMD18197.1Methyl-coenzyme M reductase; Component of the methyl-coenzyme M reductase (MCR) I that catalyzes the reductive cleavage of methyl-coenzyme M (CoM-S-CH3 or 2- (methylthio)ethanesulfonate) using coenzyme B (CoB or 7- mercaptoheptanoylthreonine phosphate) as reductant which results in the production of methane and the mixed heterodisulfide of CoB and CoM (CoM-S-S-CoB). This is the final step in methanogenesis. (551 aa)
AMD18198.1Methyl-coenzyme M reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
AMD18201.1Methyl-coenzyme M reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
ftrFormylmethanofuran--tetrahydromethanopterin formyltransferase; Catalyzes the reversible transfer of a formyl group from formylmethanofuran (formyl-MFR) to tetrahydromethanopterin (H(4)MPT) so as to produce 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) and methanofuran (MFR); Belongs to the FTR family. (295 aa)
mtdMethylenetetrahydromethanopterin dehydrogenase; Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT. (276 aa)
fae-hpsBifunctional formaldehyde-activating protein/3-hexulose-6-phosphate synthase; Catalyzes the condensation of formaldehyde with tetrahydromethanopterin (H(4)MPT) to 5,10- methylenetetrahydromethanopterin; In the N-terminal section; belongs to the formaldehyde- activating enzyme family. (413 aa)
Your Current Organism:
Methanobrevibacter sp. YE315
NCBI taxonomy Id: 1609968
Other names: M. sp. YE315
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