(78 nodes) SNARE complex, and COPI-mediated anterograde transport network (Caenorhabditis nigoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B9Z55_028860	Protein kinase domain-containing protein. (358 aa)
	B9Z55_028867	Protein kinase domain-containing protein. (342 aa)
	Cni-copb-1	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (964 aa)
	B9Z55_027706	t-SNARE coiled-coil homology domain-containing protein. (97 aa)
	Cni-snap-29	Uncharacterized protein. (277 aa)
	B9Z55_027070	Uncharacterized protein. (385 aa)
	B9Z55_027139	GOLD domain-containing protein; Belongs to the EMP24/GP25L family. (180 aa)
	Cni-sec-22	Uncharacterized protein; Belongs to the synaptobrevin family. (214 aa)
	Cni-memb-1	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (236 aa)
	Cni-syx-6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (122 aa)
	B9Z55_024299	Uncharacterized protein. (132 aa)
	Cni-sft-4	Uncharacterized protein. (293 aa)
	B9Z55_016554	C2H2-type domain-containing protein. (229 aa)
	Cni-snap-1	Uncharacterized protein. (246 aa)
	B9Z55_016588	Uncharacterized protein. (270 aa)
	B9Z55_016586	Uncharacterized protein. (213 aa)
	Cni-sel-9	GOLD domain-containing protein. (203 aa)
	B9Z55_017670	Uncharacterized protein. (647 aa)
	Cni-mltn-7	Uncharacterized protein. (649 aa)
	Cni-snb-2	V-SNARE coiled-coil homology domain-containing protein. (121 aa)
	Cni-rskd-1	Uncharacterized protein. (841 aa)
	Cni-F47G9.1	GOLD domain-containing protein. (218 aa)
	Cni-syx-5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (412 aa)
	Cni-memb-2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (216 aa)
	Cni-snb-1	V-SNARE coiled-coil homology domain-containing protein. (108 aa)
	Cni-syx-18	t-SNARE coiled-coil homology domain-containing protein. (418 aa)
	B9Z55_021961	TPR_REGION domain-containing protein. (296 aa)
	B9Z55_022124	Protein kinase domain-containing protein. (307 aa)
	B9Z55_012234	Uncharacterized protein. (425 aa)
	Cni-vti-1	t-SNARE coiled-coil homology domain-containing protein. (221 aa)
	Cni-vamp-8	V-SNARE coiled-coil homology domain-containing protein. (113 aa)
	Cni-flh-3	FLYWCH-type domain-containing protein. (430 aa)
	Cni-flh-1	Uncharacterized protein. (857 aa)
	Cni-nbet-1	t-SNARE coiled-coil homology domain-containing protein. (108 aa)
	Cni-copb-2	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (1005 aa)
	B9Z55_013854	Uncharacterized protein. (150 aa)
	Cni-T14G10.5	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (886 aa)
	Cni-mam-2	MAM domain-containing protein. (774 aa)
	B9Z55_014551	Uncharacterized protein. (558 aa)
	B9Z55_014553	Uncharacterized protein. (300 aa)
	B9Z55_014557	Uncharacterized protein. (952 aa)
	Cni-Y42H9AR.1	GRASP55_65 domain-containing protein. (541 aa)
	Cni-czw-1	Uncharacterized protein. (779 aa)
	B9Z55_015117	Uncharacterized protein. (309 aa)
	Cni-vamp-7	V-SNARE coiled-coil homology domain-containing protein. (245 aa)
	Cni-syx-16	t-SNARE coiled-coil homology domain-containing protein. (326 aa)
	Cni-cope-1	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family. (288 aa)
	Cni-ykt-6	Uncharacterized protein; Belongs to the synaptobrevin family. (217 aa)
	Cni-copd-1	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (515 aa)
	Cni-gos-28	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (234 aa)
	Cni-R12B2.2	Uncharacterized protein. (290 aa)
	B9Z55_009362	ER lumen protein-retaining receptor. (213 aa)
	Cni-F43D9.3	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (654 aa)
	B9Z55_009556	Uncharacterized protein. (1258 aa)
	B9Z55_009825	WD_REPEATS_REGION domain-containing protein. (292 aa)
	B9Z55_009828	WD_REPEATS_REGION domain-containing protein. (292 aa)
	B9Z55_004323	FBA_2 domain-containing protein. (317 aa)
	B9Z55_004422	FBA_2 domain-containing protein. (802 aa)
	B9Z55_004321	Uncharacterized protein. (467 aa)
	Cni-copz-1	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (184 aa)
	B9Z55_006135	Uncharacterized protein. (461 aa)
	Cni-F07F6.4	Arf-GAP domain-containing protein. (840 aa)
	Cni-golg-2	Uncharacterized protein. (926 aa)
	Cni-copa-1	Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (1231 aa)
	Cni-epg-2	Uncharacterized protein. (597 aa)
	Cni-rskn-2	Ribosomal protein S6 kinase. (772 aa)
	Cni-smgl-1	Uncharacterized protein. (1606 aa)
	Cni-use-1	Uncharacterized protein. (253 aa)
	Cni-unc-108	Uncharacterized protein. (214 aa)
	Cni-Y18D10A.11	Uncharacterized protein. (944 aa)
	Cni-syx-7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (244 aa)
	Cni-syx-17	t-SNARE coiled-coil homology domain-containing protein. (265 aa)
	B9Z55_002321	Uncharacterized protein. (95 aa)
	Cni-K02B12.7	Arf-GAP domain-containing protein. (420 aa)
	Cni-nsf-1	Uncharacterized protein. (765 aa)
	Cni-F57B10.5	GOLD domain-containing protein. (203 aa)
	B9Z55_000817	Lgl_C domain-containing protein. (838 aa)
	B9Z55_000819	LLGL domain-containing protein. (484 aa)

Your Current Organism:

Caenorhabditis nigoni

NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B9Z55_000817	B9Z55_000819	A0A2G5VVC8	A0A2G5VVD0	Lgl_C domain-containing protein.	LLGL domain-containing protein.	0.900
B9Z55_000817	B9Z55_016554	A0A2G5VVC8	A0A2G5T5J8	Lgl_C domain-containing protein.	C2H2-type domain-containing protein.	0.449
B9Z55_000817	B9Z55_017670	A0A2G5VVC8	A0A2G5TAJ5	Lgl_C domain-containing protein.	Uncharacterized protein.	0.736
B9Z55_000817	B9Z55_021961	A0A2G5VVC8	A0A2G5TU81	Lgl_C domain-containing protein.	TPR_REGION domain-containing protein.	0.469
B9Z55_000817	B9Z55_024299	A0A2G5VVC8	A0A2G5STN3	Lgl_C domain-containing protein.	Uncharacterized protein.	0.736
B9Z55_000817	B9Z55_027706	A0A2G5VVC8	A0A2G5SFF2	Lgl_C domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.536
B9Z55_000817	Cni-mltn-7	A0A2G5VVC8	A0A2G5TAQ7	Lgl_C domain-containing protein.	Uncharacterized protein.	0.736
B9Z55_000817	Cni-snap-1	A0A2G5VVC8	A0A2G5T5P0	Lgl_C domain-containing protein.	Uncharacterized protein.	0.449
B9Z55_000817	Cni-snap-29	A0A2G5VVC8	A0A2G5SGE6	Lgl_C domain-containing protein.	Uncharacterized protein.	0.734
B9Z55_000817	Cni-syx-16	A0A2G5VVC8	A0A2G5UIS6	Lgl_C domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.536
B9Z55_000817	Cni-syx-17	A0A2G5VVC8	A0A2G5VJV4	Lgl_C domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.436
B9Z55_000817	Cni-syx-6	A0A2G5VVC8	A0A2G5SS00	Lgl_C domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.633
B9Z55_000817	Cni-syx-7	A0A2G5VVC8	A0A2G5VJD4	Lgl_C domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.652
B9Z55_000817	Cni-vti-1	A0A2G5VVC8	A0A2G5TX93	Lgl_C domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.786
B9Z55_000819	B9Z55_000817	A0A2G5VVD0	A0A2G5VVC8	LLGL domain-containing protein.	Lgl_C domain-containing protein.	0.900
B9Z55_000819	B9Z55_016554	A0A2G5VVD0	A0A2G5T5J8	LLGL domain-containing protein.	C2H2-type domain-containing protein.	0.449
B9Z55_000819	B9Z55_017670	A0A2G5VVD0	A0A2G5TAJ5	LLGL domain-containing protein.	Uncharacterized protein.	0.736
B9Z55_000819	B9Z55_021961	A0A2G5VVD0	A0A2G5TU81	LLGL domain-containing protein.	TPR_REGION domain-containing protein.	0.469
B9Z55_000819	B9Z55_024299	A0A2G5VVD0	A0A2G5STN3	LLGL domain-containing protein.	Uncharacterized protein.	0.736
B9Z55_000819	B9Z55_027706	A0A2G5VVD0	A0A2G5SFF2	LLGL domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.536

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