(18 nodes) ER to Golgi transport vesicle membrane network (Caenorhabditis nigoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

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protein homology

Your Input:
	B9Z55_014553	Uncharacterized protein. (300 aa)
	Cni-sec-22	Uncharacterized protein; Belongs to the synaptobrevin family. (214 aa)
	Cni-memb-1	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (236 aa)
	Cni-F13B9.1	Protein transport protein sec16. (1610 aa)
	Cni-sel-9	GOLD domain-containing protein. (203 aa)
	Cni-memb-2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (216 aa)
	Cni-sec-23	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (257 aa)
	Cni-vti-1	t-SNARE coiled-coil homology domain-containing protein. (221 aa)
	Cni-sec-31	WD_REPEATS_REGION domain-containing protein. (1093 aa)
	Cni-sec-24.1	Uncharacterized protein. (1160 aa)
	Cni-sec-24.2	Uncharacterized protein. (976 aa)
	B9Z55_014551	Uncharacterized protein. (558 aa)
	B9Z55_014557	Uncharacterized protein. (952 aa)
	Cni-sar-1	Uncharacterized protein. (207 aa)
	Cni-npp-20	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (306 aa)
	Cni-sec-16	Protein transport protein sec16. (1236 aa)
	Cni-scp-1	Uncharacterized protein. (1100 aa)
	Cni-M04F3.4	Uncharacterized protein. (172 aa)

Your Current Organism:

Caenorhabditis nigoni

NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B9Z55_014551	B9Z55_014553	A0A2G5U6B0	A0A2G5U6C6	Uncharacterized protein.	Uncharacterized protein.	0.677
B9Z55_014551	Cni-F13B9.1	A0A2G5U6B0	A0A2G5SZN6	Uncharacterized protein.	Protein transport protein sec16.	0.503
B9Z55_014551	Cni-memb-1	A0A2G5U6B0	A0A2G5SLF2	Uncharacterized protein.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.942
B9Z55_014551	Cni-memb-2	A0A2G5U6B0	A0A2G5TKA3	Uncharacterized protein.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.942
B9Z55_014551	Cni-sec-16	A0A2G5U6B0	A0A2G5UIK3	Uncharacterized protein.	Protein transport protein sec16.	0.503
B9Z55_014551	Cni-sec-22	A0A2G5U6B0	A0A2G5SJQ4	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.846
B9Z55_014551	Cni-sec-23	A0A2G5U6B0	A0A2G5TTD7	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.760
B9Z55_014551	Cni-sec-24.1	A0A2G5U6B0	A0A2G5U4B4	Uncharacterized protein.	Uncharacterized protein.	0.780
B9Z55_014551	Cni-sec-24.2	A0A2G5U6B0	A0A2G5U4Z3	Uncharacterized protein.	Uncharacterized protein.	0.739
B9Z55_014551	Cni-sel-9	A0A2G5U6B0	A0A2G5T5U9	Uncharacterized protein.	GOLD domain-containing protein.	0.634
B9Z55_014553	B9Z55_014551	A0A2G5U6C6	A0A2G5U6B0	Uncharacterized protein.	Uncharacterized protein.	0.677
B9Z55_014553	Cni-F13B9.1	A0A2G5U6C6	A0A2G5SZN6	Uncharacterized protein.	Protein transport protein sec16.	0.503
B9Z55_014553	Cni-memb-1	A0A2G5U6C6	A0A2G5SLF2	Uncharacterized protein.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.942
B9Z55_014553	Cni-memb-2	A0A2G5U6C6	A0A2G5TKA3	Uncharacterized protein.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.942
B9Z55_014553	Cni-sec-16	A0A2G5U6C6	A0A2G5UIK3	Uncharacterized protein.	Protein transport protein sec16.	0.503
B9Z55_014553	Cni-sec-22	A0A2G5U6C6	A0A2G5SJQ4	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.846
B9Z55_014553	Cni-sec-23	A0A2G5U6C6	A0A2G5TTD7	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.760
B9Z55_014553	Cni-sec-24.1	A0A2G5U6C6	A0A2G5U4B4	Uncharacterized protein.	Uncharacterized protein.	0.780
B9Z55_014553	Cni-sec-24.2	A0A2G5U6C6	A0A2G5U4Z3	Uncharacterized protein.	Uncharacterized protein.	0.739
B9Z55_014553	Cni-sel-9	A0A2G5U6C6	A0A2G5T5U9	Uncharacterized protein.	GOLD domain-containing protein.	0.634

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