STRINGSTRING
Cni-lsm-3 Cni-lsm-3 Cni-cgh-1 Cni-cgh-1 Cni-lsm-4 Cni-lsm-4 Cni-F44E5.1 Cni-F44E5.1 Cni-patr-1 Cni-patr-1 Cni-edc-3 Cni-edc-3 B9Z55_003668 B9Z55_003668 Cni-car-1 Cni-car-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Cni-lsm-3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
Cni-cgh-1Uncharacterized protein; Belongs to the DEAD box helicase family. (501 aa)
Cni-lsm-4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
Cni-F44E5.1Uncharacterized protein. (73 aa)
Cni-patr-1Uncharacterized protein. (826 aa)
Cni-edc-3DFDF domain-containing protein. (572 aa)
B9Z55_003668TFG domain-containing protein. (538 aa)
Cni-car-1Uncharacterized protein. (335 aa)
Your Current Organism:
Caenorhabditis nigoni
NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010
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