(19 nodes) Sm domain network (Caenorhabditis nigoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Your Input:
	Cni-snr-4	Small nuclear ribonucleoprotein Sm D2. (118 aa)
	Cni-snr-2	Sm domain-containing protein. (160 aa)
	Cni-lsm-5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
	Cni-gut-2	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (112 aa)
	Cni-snr-1	Small nuclear ribonucleoprotein Sm D3. (136 aa)
	Cni-lsm-8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	Cni-lsm-7	Sm domain-containing protein. (103 aa)
	Cni-lsm-3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (102 aa)
	Cni-C49H3.4	Sm domain-containing protein. (227 aa)
	Cni-snr-5	Sm domain-containing protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
	Cni-snr-6	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)
	Cni-lsm-4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (125 aa)
	B9Z55_005812	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily. (318 aa)
	Cni-snr-3	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (151 aa)
	Cni-Y48G1C.9	Sm domain-containing protein. (106 aa)
	B9Z55_003668	TFG domain-containing protein. (538 aa)
	Cni-car-1	Uncharacterized protein. (335 aa)
	Cni-lsm-6	Sm domain-containing protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (77 aa)
	Cni-snr-7	Small nuclear ribonucleoprotein G. (79 aa)

Your Current Organism:

Caenorhabditis nigoni

NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B9Z55_003668	Cni-gut-2	A0A2G5VRF6	A0A2G5TEF1	TFG domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.552
B9Z55_003668	Cni-lsm-4	A0A2G5VRF6	A0A2G5V0R1	TFG domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.553
B9Z55_003668	Cni-lsm-5	A0A2G5VRF6	A0A2G5SI43	TFG domain-containing protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.430
B9Z55_003668	Cni-lsm-7	A0A2G5VRF6	A0A2G5U489	TFG domain-containing protein.	Sm domain-containing protein.	0.418
Cni-C49H3.4	Cni-Y48G1C.9	A0A2G5U8B9	A0A2G5VF68	Sm domain-containing protein.	Sm domain-containing protein.	0.901
Cni-C49H3.4	Cni-gut-2	A0A2G5U8B9	A0A2G5TEF1	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.621
Cni-C49H3.4	Cni-lsm-3	A0A2G5U8B9	A0A2G5U6A1	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.728
Cni-C49H3.4	Cni-lsm-4	A0A2G5U8B9	A0A2G5V0R1	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.730
Cni-C49H3.4	Cni-lsm-5	A0A2G5U8B9	A0A2G5SI43	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.731
Cni-C49H3.4	Cni-lsm-6	A0A2G5U8B9	A0A2G5VU28	Sm domain-containing protein.	Sm domain-containing protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.731
Cni-C49H3.4	Cni-lsm-7	A0A2G5U8B9	A0A2G5U489	Sm domain-containing protein.	Sm domain-containing protein.	0.731
Cni-C49H3.4	Cni-lsm-8	A0A2G5U8B9	A0A2G5U2K9	Sm domain-containing protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.730
Cni-C49H3.4	Cni-snr-1	A0A2G5U8B9	A0A2G5TVD8	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.965
Cni-C49H3.4	Cni-snr-2	A0A2G5U8B9	A0A2G5SGT9	Sm domain-containing protein.	Sm domain-containing protein.	0.970
Cni-C49H3.4	Cni-snr-3	A0A2G5U8B9	A0A2G5V3P5	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.895
Cni-C49H3.4	Cni-snr-4	A0A2G5U8B9	A0A2G5TGK4	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.560
Cni-C49H3.4	Cni-snr-5	A0A2G5U8B9	A0A2G5UK52	Sm domain-containing protein.	Sm domain-containing protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.981
Cni-C49H3.4	Cni-snr-6	A0A2G5U8B9	A0A2G5UPD1	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.971
Cni-C49H3.4	Cni-snr-7	A0A2G5U8B9	A0A2G5VVP1	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.968
Cni-Y48G1C.9	Cni-C49H3.4	A0A2G5VF68	A0A2G5U8B9	Sm domain-containing protein.	Sm domain-containing protein.	0.901

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