(49 nodes) SNARE interactions in vesicular transport network (Caenorhabditis nigoni)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B9Z55_009969	CYTOSOL_AP domain-containing protein. (103 aa)
	Cni-syx-4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (293 aa)
	Cni-syx-17	t-SNARE coiled-coil homology domain-containing protein. (265 aa)
	Cni-use-1	Uncharacterized protein. (253 aa)
	B9Z55_005104	Uncharacterized protein. (125 aa)
	B9Z55_005102	Uncharacterized protein. (159 aa)
	Cni-mltn-9	Uncharacterized protein. (735 aa)
	Cni-C26D10.3	Uncharacterized protein. (415 aa)
	Cni-camt-1	Uncharacterized protein. (1140 aa)
	Cni-lap-1	CYTOSOL_AP domain-containing protein. (396 aa)
	B9Z55_008688	ANK_REP_REGION domain-containing protein. (246 aa)
	B9Z55_008686	Uncharacterized protein. (236 aa)
	Cni-gos-28	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (234 aa)
	Cni-ykt-6	Uncharacterized protein; Belongs to the synaptobrevin family. (217 aa)
	Cni-lpd-7	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (532 aa)
	Cni-unc-64	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (293 aa)
	Cni-syx-16	t-SNARE coiled-coil homology domain-containing protein. (326 aa)
	B9Z55_010415	V-SNARE coiled-coil homology domain-containing protein. (116 aa)
	Cni-vamp-7	V-SNARE coiled-coil homology domain-containing protein. (245 aa)
	Cni-nbet-1	t-SNARE coiled-coil homology domain-containing protein. (108 aa)
	Cni-vamp-8	V-SNARE coiled-coil homology domain-containing protein. (113 aa)
	Cni-vti-1	t-SNARE coiled-coil homology domain-containing protein. (221 aa)
	B9Z55_020743	Uncharacterized protein. (1288 aa)
	Cni-C50F4.12	Uncharacterized protein. (439 aa)
	Cni-Y57E12AL.6	Uncharacterized protein. (130 aa)
	Cni-mdt-6	Uncharacterized protein. (271 aa)
	B9Z55_019908	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (251 aa)
	Cni-syx-18	t-SNARE coiled-coil homology domain-containing protein. (418 aa)
	Cni-snb-1	V-SNARE coiled-coil homology domain-containing protein. (108 aa)
	Cni-memb-2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (216 aa)
	Cni-ric-4	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (235 aa)
	Cni-syx-5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (412 aa)
	Cni-snb-2	V-SNARE coiled-coil homology domain-containing protein. (121 aa)
	B9Z55_017669	Uncharacterized protein. (121 aa)
	B9Z55_017678	Uncharacterized protein. (808 aa)
	Cni-mltn-7	Uncharacterized protein. (649 aa)
	B9Z55_017670	Uncharacterized protein. (647 aa)
	B9Z55_016586	Uncharacterized protein. (213 aa)
	Cni-phf-30	PHD-type domain-containing protein. (248 aa)
	B9Z55_016588	Uncharacterized protein. (270 aa)
	Cni-syx-2	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (309 aa)
	B9Z55_024299	Uncharacterized protein. (132 aa)
	Cni-syx-3	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (305 aa)
	Cni-aex-4	Uncharacterized protein. (234 aa)
	Cni-syx-6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (122 aa)
	Cni-memb-1	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (236 aa)
	Cni-sec-22	Uncharacterized protein; Belongs to the synaptobrevin family. (214 aa)
	Cni-snap-29	Uncharacterized protein. (277 aa)
	B9Z55_027706	t-SNARE coiled-coil homology domain-containing protein. (97 aa)

Your Current Organism:

Caenorhabditis nigoni

NCBI taxonomy Id: 1611254
Other names: C. nigoni, Caenorhabditis nigoni Felix, Braendle & Cutter, 2014, Caenorhabditis sp. 9 JU1325, Caenorhabditis sp. 9 JU1422, Caenorhabditis sp. 9 KK-2011, Caenorhabditis sp. 9 MAF-2010

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B9Z55_008686	Cni-sec-22	A0A2G5UNN5	A0A2G5SJQ4	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.834
B9Z55_008686	Cni-syx-18	A0A2G5UNN5	A0A2G5TKB7	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.827
B9Z55_008686	Cni-use-1	A0A2G5UNN5	A0A2G5VGV8	Uncharacterized protein.	Uncharacterized protein.	0.859
B9Z55_008688	B9Z55_010415	A0A2G5UNV6	A0A2G5UFR0	ANK_REP_REGION domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.413
B9Z55_008688	B9Z55_020743	A0A2G5UNV6	A0A2G5TP44	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.476
B9Z55_008688	Cni-sec-22	A0A2G5UNV6	A0A2G5SJQ4	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.930
B9Z55_008688	Cni-snb-1	A0A2G5UNV6	A0A2G5TKA8	ANK_REP_REGION domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.413
B9Z55_008688	Cni-snb-2	A0A2G5UNV6	A0A2G5TG43	ANK_REP_REGION domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.413
B9Z55_008688	Cni-syx-18	A0A2G5UNV6	A0A2G5TKB7	ANK_REP_REGION domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.817
B9Z55_008688	Cni-vamp-8	A0A2G5UNV6	A0A2G5TYH6	ANK_REP_REGION domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.413
B9Z55_008688	Cni-ykt-6	A0A2G5UNV6	A0A2G5UM62	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.441
B9Z55_009969	Cni-C26D10.3	A0A2G5UUA2	A0A2G5UXR7	CYTOSOL_AP domain-containing protein.	Uncharacterized protein.	0.418
B9Z55_010415	B9Z55_008688	A0A2G5UFR0	A0A2G5UNV6	V-SNARE coiled-coil homology domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.413
B9Z55_010415	B9Z55_016586	A0A2G5UFR0	A0A2G5T5T8	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.697
B9Z55_010415	B9Z55_016588	A0A2G5UFR0	A0A2G5T5P7	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.697
B9Z55_010415	B9Z55_017669	A0A2G5UFR0	A0A2G5TB30	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.832
B9Z55_010415	B9Z55_017670	A0A2G5UFR0	A0A2G5TAJ5	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.832
B9Z55_010415	B9Z55_017678	A0A2G5UFR0	A0A2G5TAR7	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.832
B9Z55_010415	B9Z55_024299	A0A2G5UFR0	A0A2G5STN3	V-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.832
B9Z55_010415	B9Z55_027706	A0A2G5UFR0	A0A2G5SFF2	V-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.925

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