(36 nodes) Structural constituent of ribosome network (Ornithinibacillus californiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001038485_00069	Unannotated protein. (130 aa)
	GCA_001038485_00070	Unannotated protein. (145 aa)
	GCA_001038485_00077	Unannotated protein. (314 aa)
	GCA_001038485_00078	Unannotated protein. (129 aa)
	GCA_001038485_00085	Unannotated protein. (146 aa)
	GCA_001038485_00086	Unannotated protein. (60 aa)
	GCA_001038485_00087	Unannotated protein. (167 aa)
	GCA_001038485_00088	Unannotated protein. (120 aa)
	GCA_001038485_00089	Unannotated protein. (178 aa)
	GCA_001038485_00090	Unannotated protein. (132 aa)
	GCA_001038485_00091	Unannotated protein. (61 aa)
	GCA_001038485_00092	Unannotated protein. (180 aa)
	GCA_001038485_00093	Unannotated protein. (103 aa)
	GCA_001038485_00094	Unannotated protein. (122 aa)
	GCA_001038485_00095	Unannotated protein. (87 aa)
	GCA_001038485_00096	Unannotated protein. (66 aa)
	GCA_001038485_00097	Unannotated protein. (144 aa)
	GCA_001038485_00098	Unannotated protein. (213 aa)
	GCA_001038485_00099	Unannotated protein. (113 aa)
	GCA_001038485_00100	Unannotated protein. (92 aa)
	GCA_001038485_00101	Unannotated protein. (276 aa)
	GCA_001038485_00102	Unannotated protein. (95 aa)
	GCA_001038485_00103	Unannotated protein. (207 aa)
	GCA_001038485_00104	Unannotated protein. (209 aa)
	GCA_001038485_00105	Unannotated protein. (102 aa)
	GCA_001038485_00108	Unannotated protein. (156 aa)
	GCA_001038485_00114	Unannotated protein. (121 aa)
	GCA_001038485_00115	Unannotated protein. (166 aa)
	GCA_001038485_00116	Unannotated protein. (230 aa)
	GCA_001038485_00117	Unannotated protein. (141 aa)
	GCA_001038485_00287	Unannotated protein. (96 aa)
	GCA_001038485_00289	Unannotated protein. (77 aa)
	GCA_001038485_01773	Unannotated protein. (89 aa)
	GCA_001038485_01791	Unannotated protein. (248 aa)
	GCA_001038485_01845	Unannotated protein. (90 aa)
	GCA_001038485_02220	Unannotated protein. (200 aa)

Your Current Organism:

Ornithinibacillus californiensis

NCBI taxonomy Id: 161536
Other names: Bacillus sp. MB-9, CCM 7237, DSM 16628, O. californiensis, Ornithinibacillus californiensis Mayr et al. 2006, strain MB-9

Send network to Cytoscape

Export your current network:

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file format is 'PNG': portable network graphic

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001038485_00069	GCA_001038485_00070	Unannotated protein.	Unannotated protein.	0.999
GCA_001038485_00069	GCA_001038485_00077	Unannotated protein.	Unannotated protein.	0.992
GCA_001038485_00069	GCA_001038485_00078	Unannotated protein.	Unannotated protein.	0.999
GCA_001038485_00069	GCA_001038485_00085	Unannotated protein.	Unannotated protein.	0.995
GCA_001038485_00069	GCA_001038485_00086	Unannotated protein.	Unannotated protein.	0.987
GCA_001038485_00069	GCA_001038485_00087	Unannotated protein.	Unannotated protein.	0.999
GCA_001038485_00069	GCA_001038485_00088	Unannotated protein.	Unannotated protein.	0.993
GCA_001038485_00069	GCA_001038485_00089	Unannotated protein.	Unannotated protein.	0.994
GCA_001038485_00069	GCA_001038485_00090	Unannotated protein.	Unannotated protein.	0.998
GCA_001038485_00069	GCA_001038485_00091	Unannotated protein.	Unannotated protein.	0.999
GCA_001038485_00069	GCA_001038485_00092	Unannotated protein.	Unannotated protein.	0.996
GCA_001038485_00069	GCA_001038485_00093	Unannotated protein.	Unannotated protein.	0.993
GCA_001038485_00069	GCA_001038485_00094	Unannotated protein.	Unannotated protein.	0.996
GCA_001038485_00069	GCA_001038485_00095	Unannotated protein.	Unannotated protein.	0.998
GCA_001038485_00069	GCA_001038485_00096	Unannotated protein.	Unannotated protein.	0.991
GCA_001038485_00069	GCA_001038485_00097	Unannotated protein.	Unannotated protein.	0.998
GCA_001038485_00069	GCA_001038485_00098	Unannotated protein.	Unannotated protein.	0.998
GCA_001038485_00069	GCA_001038485_00099	Unannotated protein.	Unannotated protein.	0.995
GCA_001038485_00069	GCA_001038485_00100	Unannotated protein.	Unannotated protein.	0.998
GCA_001038485_00069	GCA_001038485_00101	Unannotated protein.	Unannotated protein.	0.997