(5 nodes) Mixed, incl. Ribosomal L29 protein, and Ribosomal protein L25/L23 network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000008063	Mitochondrial ribosomal protein L47. (263 aa)
	ENSAPEP00000009202	Mitochondrial ribosomal protein L46. (292 aa)
	ENSAPEP00000009291	Mitochondrial ribosomal protein L30. (160 aa)
	ENSAPEP00000014452	Mitochondrial ribosomal protein L23. (154 aa)
	ENSAPEP00000024462	Mitochondrial ribosomal protein L40. (203 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSAPEP00000008063	ENSAPEP00000009202	Mitochondrial ribosomal protein L47.	Mitochondrial ribosomal protein L46.	0.997
ENSAPEP00000008063	ENSAPEP00000009291	Mitochondrial ribosomal protein L47.	Mitochondrial ribosomal protein L30.	0.997
ENSAPEP00000008063	ENSAPEP00000014452	Mitochondrial ribosomal protein L47.	Mitochondrial ribosomal protein L23.	0.998
ENSAPEP00000008063	ENSAPEP00000024462	Mitochondrial ribosomal protein L47.	Mitochondrial ribosomal protein L40.	0.992
ENSAPEP00000009202	ENSAPEP00000008063	Mitochondrial ribosomal protein L46.	Mitochondrial ribosomal protein L47.	0.997
ENSAPEP00000009202	ENSAPEP00000009291	Mitochondrial ribosomal protein L46.	Mitochondrial ribosomal protein L30.	0.975
ENSAPEP00000009202	ENSAPEP00000014452	Mitochondrial ribosomal protein L46.	Mitochondrial ribosomal protein L23.	0.996
ENSAPEP00000009202	ENSAPEP00000024462	Mitochondrial ribosomal protein L46.	Mitochondrial ribosomal protein L40.	0.998
ENSAPEP00000009291	ENSAPEP00000008063	Mitochondrial ribosomal protein L30.	Mitochondrial ribosomal protein L47.	0.997
ENSAPEP00000009291	ENSAPEP00000009202	Mitochondrial ribosomal protein L30.	Mitochondrial ribosomal protein L46.	0.975
ENSAPEP00000009291	ENSAPEP00000014452	Mitochondrial ribosomal protein L30.	Mitochondrial ribosomal protein L23.	0.996
ENSAPEP00000009291	ENSAPEP00000024462	Mitochondrial ribosomal protein L30.	Mitochondrial ribosomal protein L40.	0.993
ENSAPEP00000014452	ENSAPEP00000008063	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L47.	0.998
ENSAPEP00000014452	ENSAPEP00000009202	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L46.	0.996
ENSAPEP00000014452	ENSAPEP00000009291	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L30.	0.996
ENSAPEP00000014452	ENSAPEP00000024462	Mitochondrial ribosomal protein L23.	Mitochondrial ribosomal protein L40.	0.982
ENSAPEP00000024462	ENSAPEP00000008063	Mitochondrial ribosomal protein L40.	Mitochondrial ribosomal protein L47.	0.992
ENSAPEP00000024462	ENSAPEP00000009202	Mitochondrial ribosomal protein L40.	Mitochondrial ribosomal protein L46.	0.998
ENSAPEP00000024462	ENSAPEP00000009291	Mitochondrial ribosomal protein L40.	Mitochondrial ribosomal protein L30.	0.993
ENSAPEP00000024462	ENSAPEP00000014452	Mitochondrial ribosomal protein L40.	Mitochondrial ribosomal protein L23.	0.982