(10 nodes) Mixed, incl. ROK, N-terminal, and Heterogeneous nuclear ribonucleoprotein C network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000002005	RRM domain-containing protein. (306 aa)
	ENSAPEP00000004407	Heterogeneous nuclear ribonucleoprotein K. (434 aa)
	ENSAPEP00000005799	Uncharacterized protein. (333 aa)
	ENSAPEP00000005922	Heterogeneous nuclear ribonucleoprotein M. (682 aa)
	ENSAPEP00000010174	RNA binding motif protein X-linked. (390 aa)
	ENSAPEP00000020586	Heterogeneous nuclear ribonucleoprotein Ub. (797 aa)
	ENSAPEP00000020890	Uncharacterized protein. (209 aa)
	ENSAPEP00000027977	Heterogeneous nuclear ribonucleoprotein K, like. (430 aa)
	ENSAPEP00000028128	RRM domain-containing protein. (321 aa)
	ENSAPEP00000031725	Heterogeneous nuclear ribonucleoprotein A3. (367 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSAPEP00000002005	ENSAPEP00000004407	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K.	0.977
ENSAPEP00000002005	ENSAPEP00000005799	RRM domain-containing protein.	Uncharacterized protein.	0.953
ENSAPEP00000002005	ENSAPEP00000005922	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein M.	0.989
ENSAPEP00000002005	ENSAPEP00000010174	RRM domain-containing protein.	RNA binding motif protein X-linked.	0.957
ENSAPEP00000002005	ENSAPEP00000020586	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein Ub.	0.948
ENSAPEP00000002005	ENSAPEP00000020890	RRM domain-containing protein.	Uncharacterized protein.	0.906
ENSAPEP00000002005	ENSAPEP00000027977	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein K, like.	0.977
ENSAPEP00000002005	ENSAPEP00000031725	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein A3.	0.953
ENSAPEP00000004407	ENSAPEP00000002005	Heterogeneous nuclear ribonucleoprotein K.	RRM domain-containing protein.	0.977
ENSAPEP00000004407	ENSAPEP00000005799	Heterogeneous nuclear ribonucleoprotein K.	Uncharacterized protein.	0.975
ENSAPEP00000004407	ENSAPEP00000005922	Heterogeneous nuclear ribonucleoprotein K.	Heterogeneous nuclear ribonucleoprotein M.	0.991
ENSAPEP00000004407	ENSAPEP00000010174	Heterogeneous nuclear ribonucleoprotein K.	RNA binding motif protein X-linked.	0.974
ENSAPEP00000004407	ENSAPEP00000020586	Heterogeneous nuclear ribonucleoprotein K.	Heterogeneous nuclear ribonucleoprotein Ub.	0.962
ENSAPEP00000004407	ENSAPEP00000020890	Heterogeneous nuclear ribonucleoprotein K.	Uncharacterized protein.	0.889
ENSAPEP00000004407	ENSAPEP00000027977	Heterogeneous nuclear ribonucleoprotein K.	Heterogeneous nuclear ribonucleoprotein K, like.	0.897
ENSAPEP00000004407	ENSAPEP00000028128	Heterogeneous nuclear ribonucleoprotein K.	RRM domain-containing protein.	0.955
ENSAPEP00000004407	ENSAPEP00000031725	Heterogeneous nuclear ribonucleoprotein K.	Heterogeneous nuclear ribonucleoprotein A3.	0.975
ENSAPEP00000005799	ENSAPEP00000002005	Uncharacterized protein.	RRM domain-containing protein.	0.953
ENSAPEP00000005799	ENSAPEP00000004407	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein K.	0.975
ENSAPEP00000005799	ENSAPEP00000005922	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein M.	0.979