(6 nodes) Response to protozoan network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000000794	CD40 molecule, TNF receptor superfamily member 5. (290 aa)
	ENSAPEP00000002540	Basic leucine zipper transcription factor, ATF-like. (124 aa)
	ENSAPEP00000030859	Uncharacterized protein. (244 aa)
	ENSAPEP00000026001	V-set domain containing T cell activation inhibitor 1. (275 aa)
	IL12B-2	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily. (355 aa)
	ENSAPEP00000010190	Interleukin 10. (187 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPEP00000000794	ENSAPEP00000010190	ENSAPEP00000000794	ENSAPEP00000010190	CD40 molecule, TNF receptor superfamily member 5.	Interleukin 10.	0.539
ENSAPEP00000010190	ENSAPEP00000000794	ENSAPEP00000010190	ENSAPEP00000000794	Interleukin 10.	CD40 molecule, TNF receptor superfamily member 5.	0.539
ENSAPEP00000010190	IL12B-2	ENSAPEP00000010190	ENSAPEP00000016214	Interleukin 10.	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	0.422
IL12B-2	ENSAPEP00000010190	ENSAPEP00000016214	ENSAPEP00000010190	Interleukin-12 subunit beta; Belongs to the type I cytokine receptor family. Type 3 subfamily.	Interleukin 10.	0.422