(58 nodes) rRNA binding network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000032302	Mitochondrial ribosomal protein S18C. (129 aa)
	ENSAPEP00000032493	Uncharacterized protein. (106 aa)
	RPL5-2	Ribosomal protein L5b. (298 aa)
	ENSAPEP00000034594	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (462 aa)
	ENSAPEP00000010217	Uncharacterized protein. (118 aa)
	ENSAPEP00000010198	C2H2-type domain-containing protein. (129 aa)
	ENSAPEP00000009679	Mitochondrial ribosomal protein S18A. (208 aa)
	ENSAPEP00000009483	Mitochondrial ribosomal protein S27. (417 aa)
	ENSAPEP00000009181	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (195 aa)
	ENSAPEP00000007292	IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
	ENSAPEP00000006899	Ribosome production factor 1 homolog. (358 aa)
	ENSAPEP00000006521	FAST kinase domains 2. (688 aa)
	ENSAPEP00000005926	Si:dkey-208k4.2. (370 aa)
	ENSAPEP00000005618	Ribosome production factor 2 homolog. (308 aa)
	ENSAPEP00000005485	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (180 aa)
	ENSAPEP00000004920	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (315 aa)
	ENSAPEP00000003986	Ribosomal protein L8. (257 aa)
	ENSAPEP00000002947	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28. (572 aa)
	ENSAPEP00000001716	Uncharacterized protein. (126 aa)
	ENSAPEP00000001631	Uncharacterized protein. (155 aa)
	ENSAPEP00000011499	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (194 aa)
	ENSAPEP00000012204	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family. (194 aa)
	ENSAPEP00000013177	Lipase, hormone-sensitive b. (867 aa)
	ENSAPEP00000013219	Mitochondrial ribosomal protein S7. (229 aa)
	MTERF4	Mitochondrial transcription termination factor 4. (355 aa)
	ENSAPEP00000014098	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (187 aa)
	ENSAPEP00000014724	RCC1 like. (487 aa)
	ENSAPEP00000015171	Uncharacterized protein. (609 aa)
	ENSAPEP00000015195	Uncharacterized protein. (131 aa)
	ENSAPEP00000015600	EMG1 N1-specific pseudouridine methyltransferase. (244 aa)
	ENSAPEP00000018201	Translational activator of mitochondrially encoded cytochrome c oxidase I. (298 aa)
	ENSAPEP00000018865	Nucleolar protein 12. (234 aa)
	ENSAPEP00000019355	SWIB domain-containing protein. (113 aa)
	ENSAPEP00000019407	RING-type domain-containing protein. (99 aa)
	ENSAPEP00000019673	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family. (149 aa)
	RPL5	Ribosomal protein L5. (298 aa)
	ENSAPEP00000020743	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (263 aa)
	ENSAPEP00000021671	Era-like 12S mitochondrial rRNA chaperone 1. (450 aa)
	ENSAPEP00000021676	Caveolae associated protein 1b. (469 aa)
	ENSAPEP00000022081	Mitochondrial ribosomal protein S6. (110 aa)
	ENSAPEP00000022505	Mitochondrial ribosomal protein L18. (189 aa)
	ENSAPEP00000022549	Pentatricopeptide repeat domain 3. (677 aa)
	ENSAPEP00000023013	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (189 aa)
	ENSAPEP00000000084	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (184 aa)
	ENSAPEP00000023449	Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family. (161 aa)
	ENSAPEP00000024102	Brix domain containing 2. (342 aa)
	ENSAPEP00000024240	IMP U3 small nucleolar ribonucleoprotein 4. (294 aa)
	ENSAPEP00000025765	Caveolae associated protein 1a. (422 aa)
	ENSAPEP00000026683	UTP23 small subunit processome component. (253 aa)
	ENSAPEP00000026703	Uncharacterized protein. (501 aa)
	ENSAPEP00000027341	Ribosomal protein L9. (193 aa)
	ENSAPEP00000028620	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (258 aa)
	ENSAPEP00000028676	Neugrin, neurite outgrowth associated. (306 aa)
	ENSAPEP00000029023	Lipase, hormone-sensitive a. (675 aa)
	ENSAPEP00000029386	Ribosomal protein L37; Binds to the 23S rRNA. (97 aa)
	ENSAPEP00000030014	Lipase, hormone-sensitive a. (698 aa)
	ENSAPEP00000030922	Coiled-coil domain containing 105. (444 aa)
	ENSAPEP00000031408	Exoribonuclease 1. (341 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPEP00000000084	ENSAPEP00000002947	ENSAPEP00000000084	ENSAPEP00000002947	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.	0.535
ENSAPEP00000000084	ENSAPEP00000003986	ENSAPEP00000000084	ENSAPEP00000003986	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein L8.	0.999
ENSAPEP00000000084	ENSAPEP00000004920	ENSAPEP00000000084	ENSAPEP00000004920	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
ENSAPEP00000000084	ENSAPEP00000005485	ENSAPEP00000000084	ENSAPEP00000005485	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.	0.999
ENSAPEP00000000084	ENSAPEP00000005618	ENSAPEP00000000084	ENSAPEP00000005618	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Ribosome production factor 2 homolog.	0.881
ENSAPEP00000000084	ENSAPEP00000007292	ENSAPEP00000000084	ENSAPEP00000007292	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	IMP U3 small nucleolar ribonucleoprotein 3.	0.989
ENSAPEP00000000084	ENSAPEP00000009181	ENSAPEP00000000084	ENSAPEP00000009181	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.	0.982
ENSAPEP00000000084	ENSAPEP00000009483	ENSAPEP00000000084	ENSAPEP00000009483	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Mitochondrial ribosomal protein S27.	0.785
ENSAPEP00000000084	ENSAPEP00000009679	ENSAPEP00000000084	ENSAPEP00000009679	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Mitochondrial ribosomal protein S18A.	0.821
ENSAPEP00000000084	ENSAPEP00000011499	ENSAPEP00000000084	ENSAPEP00000011499	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.999
ENSAPEP00000000084	ENSAPEP00000012204	ENSAPEP00000000084	ENSAPEP00000012204	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.572
ENSAPEP00000000084	ENSAPEP00000013219	ENSAPEP00000000084	ENSAPEP00000013219	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Mitochondrial ribosomal protein S7.	0.989
ENSAPEP00000000084	ENSAPEP00000014098	ENSAPEP00000000084	ENSAPEP00000014098	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999
ENSAPEP00000000084	ENSAPEP00000015171	ENSAPEP00000000084	ENSAPEP00000015171	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.993
ENSAPEP00000000084	ENSAPEP00000015195	ENSAPEP00000000084	ENSAPEP00000015195	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.993
ENSAPEP00000000084	ENSAPEP00000019673	ENSAPEP00000000084	ENSAPEP00000019673	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.	0.995
ENSAPEP00000000084	ENSAPEP00000020743	ENSAPEP00000000084	ENSAPEP00000020743	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
ENSAPEP00000000084	ENSAPEP00000022081	ENSAPEP00000000084	ENSAPEP00000022081	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Mitochondrial ribosomal protein S6.	0.996
ENSAPEP00000000084	ENSAPEP00000022505	ENSAPEP00000000084	ENSAPEP00000022505	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Mitochondrial ribosomal protein L18.	0.780
ENSAPEP00000000084	ENSAPEP00000022549	ENSAPEP00000000084	ENSAPEP00000022549	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	Pentatricopeptide repeat domain 3.	0.642