(10 nodes) Rap protein signal transduction network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000033555	Rap guanine nucleotide exchange factor (GEF) 3. (887 aa)
	ENSAPEP00000000792	Rap guanine nucleotide exchange factor (GEF) 2. (1648 aa)
	ENSAPEP00000012700	RAP2C, member of RAS oncogene family. (183 aa)
	ENSAPEP00000013801	Uncharacterized protein. (185 aa)
	ENSAPEP00000028969	Rap guanine nucleotide exchange factor (GEF) 6. (1577 aa)
	ENSAPEP00000031164	Rap guanine nucleotide exchange factor (GEF) 1b. (1200 aa)
	ENSAPEP00000031314	RAP1A, member of RAS oncogene family a. (185 aa)
	RAP2A	RAP2A, member of RAS oncogene family. (183 aa)
	ENSAPEP00000033294	Uncharacterized protein. (184 aa)
	ENSAPEP00000033654	Uncharacterized protein. (885 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPEP00000000792	ENSAPEP00000012700	ENSAPEP00000000792	ENSAPEP00000012700	Rap guanine nucleotide exchange factor (GEF) 2.	RAP2C, member of RAS oncogene family.	0.949
ENSAPEP00000000792	ENSAPEP00000013801	ENSAPEP00000000792	ENSAPEP00000013801	Rap guanine nucleotide exchange factor (GEF) 2.	Uncharacterized protein.	0.915
ENSAPEP00000000792	ENSAPEP00000031164	ENSAPEP00000000792	ENSAPEP00000031164	Rap guanine nucleotide exchange factor (GEF) 2.	Rap guanine nucleotide exchange factor (GEF) 1b.	0.650
ENSAPEP00000000792	ENSAPEP00000031314	ENSAPEP00000000792	ENSAPEP00000031314	Rap guanine nucleotide exchange factor (GEF) 2.	RAP1A, member of RAS oncogene family a.	0.915
ENSAPEP00000000792	ENSAPEP00000033294	ENSAPEP00000000792	ENSAPEP00000033294	Rap guanine nucleotide exchange factor (GEF) 2.	Uncharacterized protein.	0.915
ENSAPEP00000000792	ENSAPEP00000033654	ENSAPEP00000000792	ENSAPEP00000033654	Rap guanine nucleotide exchange factor (GEF) 2.	Uncharacterized protein.	0.650
ENSAPEP00000000792	RAP2A	ENSAPEP00000000792	ENSAPEP00000033006	Rap guanine nucleotide exchange factor (GEF) 2.	RAP2A, member of RAS oncogene family.	0.886
ENSAPEP00000012700	ENSAPEP00000000792	ENSAPEP00000012700	ENSAPEP00000000792	RAP2C, member of RAS oncogene family.	Rap guanine nucleotide exchange factor (GEF) 2.	0.949
ENSAPEP00000012700	ENSAPEP00000028969	ENSAPEP00000012700	ENSAPEP00000028969	RAP2C, member of RAS oncogene family.	Rap guanine nucleotide exchange factor (GEF) 6.	0.886
ENSAPEP00000012700	ENSAPEP00000031164	ENSAPEP00000012700	ENSAPEP00000031164	RAP2C, member of RAS oncogene family.	Rap guanine nucleotide exchange factor (GEF) 1b.	0.712
ENSAPEP00000012700	ENSAPEP00000033555	ENSAPEP00000012700	ENSAPEP00000033555	RAP2C, member of RAS oncogene family.	Rap guanine nucleotide exchange factor (GEF) 3.	0.758
ENSAPEP00000012700	ENSAPEP00000033654	ENSAPEP00000012700	ENSAPEP00000033654	RAP2C, member of RAS oncogene family.	Uncharacterized protein.	0.712
ENSAPEP00000013801	ENSAPEP00000000792	ENSAPEP00000013801	ENSAPEP00000000792	Uncharacterized protein.	Rap guanine nucleotide exchange factor (GEF) 2.	0.915
ENSAPEP00000013801	ENSAPEP00000028969	ENSAPEP00000013801	ENSAPEP00000028969	Uncharacterized protein.	Rap guanine nucleotide exchange factor (GEF) 6.	0.945
ENSAPEP00000013801	ENSAPEP00000031164	ENSAPEP00000013801	ENSAPEP00000031164	Uncharacterized protein.	Rap guanine nucleotide exchange factor (GEF) 1b.	0.907
ENSAPEP00000013801	ENSAPEP00000031314	ENSAPEP00000013801	ENSAPEP00000031314	Uncharacterized protein.	RAP1A, member of RAS oncogene family a.	0.896
ENSAPEP00000013801	ENSAPEP00000033294	ENSAPEP00000013801	ENSAPEP00000033294	Uncharacterized protein.	Uncharacterized protein.	0.896
ENSAPEP00000013801	ENSAPEP00000033555	ENSAPEP00000013801	ENSAPEP00000033555	Uncharacterized protein.	Rap guanine nucleotide exchange factor (GEF) 3.	0.869
ENSAPEP00000013801	ENSAPEP00000033654	ENSAPEP00000013801	ENSAPEP00000033654	Uncharacterized protein.	Uncharacterized protein.	0.907
ENSAPEP00000028969	ENSAPEP00000012700	ENSAPEP00000028969	ENSAPEP00000012700	Rap guanine nucleotide exchange factor (GEF) 6.	RAP2C, member of RAS oncogene family.	0.886