(30 nodes) miRNA processing network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000005144	Serrate RNA effector molecule homolog (Arabidopsis). (880 aa)
	ENSAPEP00000006644	Adenosine deaminase RNA specific. (1338 aa)
	ENSAPEP00000006919	DGCR8 microprocessor complex subunit. (779 aa)
	SNIP1	Smad nuclear interacting protein 1. (361 aa)
	LIN28A	Lin-28 homolog A. (208 aa)
	ENSAPEP00000008908	Pseudouridine synthase 10. (541 aa)
	ENSAPEP00000009283	Methyltransferase like 3; Belongs to the MT-A70-like family. (592 aa)
	ENSAPEP00000001503	FHA domain-containing protein. (130 aa)
	ENSAPEP00000021007	C2H2-type domain-containing protein. (160 aa)
	TUT4	Terminal uridylyl transferase 4. (1536 aa)
	ENSAPEP00000028134	Pumilio RNA-binding family member 2. (1213 aa)
	ENSAPEP00000028214	Uncharacterized protein. (862 aa)
	LIN28B	Lin-28 homolog B (C. elegans). (236 aa)
	ENSAPEP00000030899	Lin-28 homolog B (C. elegans). (236 aa)
	ENSAPEP00000031548	SPOUT domain containing methyltransferase 1. (412 aa)
	ENSAPEP00000031592	ArgoN domain-containing protein. (61 aa)
	ENSAPEP00000031638	Argonaute RISC component 4; Belongs to the argonaute family. (770 aa)
	ENSAPEP00000032136	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily. (1904 aa)
	ENSAPEP00000010429	Lin-28 homolog A (C. elegans). (208 aa)
	ENSAPEP00000010894	Uncharacterized protein. (1352 aa)
	TARBP2	RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...] (345 aa)
	ENSAPEP00000017119	Zinc finger CCCH-type containing 7A. (991 aa)
	ZC3H7B	Zinc finger CCCH-type containing 7B. (1025 aa)
	ENSAPEP00000018107	Nucleoporin 155. (1376 aa)
	ENSAPEP00000018366	RRM domain-containing protein. (168 aa)
	ENSAPEP00000020104	Uncharacterized protein; Belongs to the MT-A70-like family. (406 aa)
	ENSAPEP00000020443	Pumilio RNA-binding family member 1. (1163 aa)
	SRSF3	Serine and arginine rich splicing factor 3b. (165 aa)
	ENSAPEP00000020942	Uncharacterized protein. (331 aa)
	ENSAPEP00000020977	Uncharacterized protein. (155 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPEP00000001503	ENSAPEP00000010894	ENSAPEP00000001503	ENSAPEP00000010894	FHA domain-containing protein.	Uncharacterized protein.	0.589
ENSAPEP00000001503	ENSAPEP00000032136	ENSAPEP00000001503	ENSAPEP00000032136	FHA domain-containing protein.	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.	0.479
ENSAPEP00000005144	ENSAPEP00000010894	ENSAPEP00000005144	ENSAPEP00000010894	Serrate RNA effector molecule homolog (Arabidopsis).	Uncharacterized protein.	0.639
ENSAPEP00000005144	ENSAPEP00000032136	ENSAPEP00000005144	ENSAPEP00000032136	Serrate RNA effector molecule homolog (Arabidopsis).	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.	0.790
ENSAPEP00000006644	ENSAPEP00000010894	ENSAPEP00000006644	ENSAPEP00000010894	Adenosine deaminase RNA specific.	Uncharacterized protein.	0.585
ENSAPEP00000006644	ENSAPEP00000032136	ENSAPEP00000006644	ENSAPEP00000032136	Adenosine deaminase RNA specific.	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.	0.712
ENSAPEP00000006919	ENSAPEP00000009283	ENSAPEP00000006919	ENSAPEP00000009283	DGCR8 microprocessor complex subunit.	Methyltransferase like 3; Belongs to the MT-A70-like family.	0.511
ENSAPEP00000006919	ENSAPEP00000010894	ENSAPEP00000006919	ENSAPEP00000010894	DGCR8 microprocessor complex subunit.	Uncharacterized protein.	0.992
ENSAPEP00000006919	ENSAPEP00000020104	ENSAPEP00000006919	ENSAPEP00000020104	DGCR8 microprocessor complex subunit.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.511
ENSAPEP00000006919	ENSAPEP00000032136	ENSAPEP00000006919	ENSAPEP00000032136	DGCR8 microprocessor complex subunit.	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.	0.973
ENSAPEP00000006919	LIN28A	ENSAPEP00000006919	ENSAPEP00000008635	DGCR8 microprocessor complex subunit.	Lin-28 homolog A.	0.434
ENSAPEP00000006919	TARBP2	ENSAPEP00000006919	ENSAPEP00000011717	DGCR8 microprocessor complex subunit.	RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...]	0.683
ENSAPEP00000009283	ENSAPEP00000006919	ENSAPEP00000009283	ENSAPEP00000006919	Methyltransferase like 3; Belongs to the MT-A70-like family.	DGCR8 microprocessor complex subunit.	0.511
ENSAPEP00000010429	ENSAPEP00000010894	ENSAPEP00000010429	ENSAPEP00000010894	Lin-28 homolog A (C. elegans).	Uncharacterized protein.	0.499
ENSAPEP00000010429	ENSAPEP00000018366	ENSAPEP00000010429	ENSAPEP00000018366	Lin-28 homolog A (C. elegans).	RRM domain-containing protein.	0.500
ENSAPEP00000010429	ENSAPEP00000020942	ENSAPEP00000010429	ENSAPEP00000020942	Lin-28 homolog A (C. elegans).	Uncharacterized protein.	0.428
ENSAPEP00000010429	ENSAPEP00000020977	ENSAPEP00000010429	ENSAPEP00000020977	Lin-28 homolog A (C. elegans).	Uncharacterized protein.	0.428
ENSAPEP00000010429	ENSAPEP00000021007	ENSAPEP00000010429	ENSAPEP00000021007	Lin-28 homolog A (C. elegans).	C2H2-type domain-containing protein.	0.428
ENSAPEP00000010429	ENSAPEP00000032136	ENSAPEP00000010429	ENSAPEP00000032136	Lin-28 homolog A (C. elegans).	Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.	0.473
ENSAPEP00000010429	SRSF3	ENSAPEP00000010429	ENSAPEP00000020826	Lin-28 homolog A (C. elegans).	Serine and arginine rich splicing factor 3b.	0.500