(15 nodes) Regulation of collateral sprouting network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000022986	Interferon-related developmental regulator 1. (428 aa)
	ENSAPEP00000026605	IST1 factor associated with ESCRT-III. (353 aa)
	ENSAPEP00000026535	Uncharacterized protein. (1045 aa)
	RND2	Rho family GTPase 2. (230 aa)
	ENSAPEP00000016953	Si:ch73-40a2.1. (914 aa)
	ENSAPEP00000016913	Interferon-related developmental regulator 2. (458 aa)
	ENSAPEP00000014385	Spartin b. (592 aa)
	ENSAPEP00000012335	Unc-51 like autophagy activating kinase 1a. (910 aa)
	ENSAPEP00000007967	Unc-51 like autophagy activating kinase 2. (1044 aa)
	ENSAPEP00000007702	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (355 aa)
	ENSAPEP00000007391	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (257 aa)
	ENSAPEP00000006759	Unc-51 like autophagy activating kinase 1. (1026 aa)
	ENSAPEP00000004906	Rho family GTPase 2. (233 aa)
	ENSAPEP00000002885	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (334 aa)
	ENSAPEP00000001350	Eph receptor A4, like. (989 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPEP00000001350	ENSAPEP00000004906	ENSAPEP00000001350	ENSAPEP00000004906	Eph receptor A4, like.	Rho family GTPase 2.	0.460
ENSAPEP00000001350	ENSAPEP00000007391	ENSAPEP00000001350	ENSAPEP00000007391	Eph receptor A4, like.	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	0.615
ENSAPEP00000001350	RND2	ENSAPEP00000001350	ENSAPEP00000022720	Eph receptor A4, like.	Rho family GTPase 2.	0.460
ENSAPEP00000004906	ENSAPEP00000001350	ENSAPEP00000004906	ENSAPEP00000001350	Rho family GTPase 2.	Eph receptor A4, like.	0.460
ENSAPEP00000004906	ENSAPEP00000016953	ENSAPEP00000004906	ENSAPEP00000016953	Rho family GTPase 2.	Si:ch73-40a2.1.	0.460
ENSAPEP00000004906	ENSAPEP00000026535	ENSAPEP00000004906	ENSAPEP00000026535	Rho family GTPase 2.	Uncharacterized protein.	0.460
ENSAPEP00000006759	ENSAPEP00000007967	ENSAPEP00000006759	ENSAPEP00000007967	Unc-51 like autophagy activating kinase 1.	Unc-51 like autophagy activating kinase 2.	0.900
ENSAPEP00000006759	ENSAPEP00000012335	ENSAPEP00000006759	ENSAPEP00000012335	Unc-51 like autophagy activating kinase 1.	Unc-51 like autophagy activating kinase 1a.	0.898
ENSAPEP00000006759	ENSAPEP00000026605	ENSAPEP00000006759	ENSAPEP00000026605	Unc-51 like autophagy activating kinase 1.	IST1 factor associated with ESCRT-III.	0.621
ENSAPEP00000007391	ENSAPEP00000001350	ENSAPEP00000007391	ENSAPEP00000001350	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Eph receptor A4, like.	0.615
ENSAPEP00000007391	ENSAPEP00000016953	ENSAPEP00000007391	ENSAPEP00000016953	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Si:ch73-40a2.1.	0.615
ENSAPEP00000007391	ENSAPEP00000026535	ENSAPEP00000007391	ENSAPEP00000026535	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Uncharacterized protein.	0.615
ENSAPEP00000007967	ENSAPEP00000006759	ENSAPEP00000007967	ENSAPEP00000006759	Unc-51 like autophagy activating kinase 2.	Unc-51 like autophagy activating kinase 1.	0.900
ENSAPEP00000007967	ENSAPEP00000012335	ENSAPEP00000007967	ENSAPEP00000012335	Unc-51 like autophagy activating kinase 2.	Unc-51 like autophagy activating kinase 1a.	0.902
ENSAPEP00000007967	ENSAPEP00000026605	ENSAPEP00000007967	ENSAPEP00000026605	Unc-51 like autophagy activating kinase 2.	IST1 factor associated with ESCRT-III.	0.621
ENSAPEP00000012335	ENSAPEP00000006759	ENSAPEP00000012335	ENSAPEP00000006759	Unc-51 like autophagy activating kinase 1a.	Unc-51 like autophagy activating kinase 1.	0.898
ENSAPEP00000012335	ENSAPEP00000007967	ENSAPEP00000012335	ENSAPEP00000007967	Unc-51 like autophagy activating kinase 1a.	Unc-51 like autophagy activating kinase 2.	0.902
ENSAPEP00000012335	ENSAPEP00000026605	ENSAPEP00000012335	ENSAPEP00000026605	Unc-51 like autophagy activating kinase 1a.	IST1 factor associated with ESCRT-III.	0.621
ENSAPEP00000014385	ENSAPEP00000026605	ENSAPEP00000014385	ENSAPEP00000026605	Spartin b.	IST1 factor associated with ESCRT-III.	0.937
ENSAPEP00000016953	ENSAPEP00000004906	ENSAPEP00000016953	ENSAPEP00000004906	Si:ch73-40a2.1.	Rho family GTPase 2.	0.460