(4 nodes) Histone pre-mRNA DCP binding network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000008689	Small nuclear ribonucleoprotein Sm D3. (127 aa)
	ENSAPEP00000008672	Small nuclear ribonucleoprotein Sm D3. (108 aa)
	LSM10-2	LSM10, U7 small nuclear RNA associated. (129 aa)
	LSM10	LSM10, U7 small nuclear RNA associated. (121 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPEP00000008672	LSM10	ENSAPEP00000008672	ENSAPEP00000030728	Small nuclear ribonucleoprotein Sm D3.	LSM10, U7 small nuclear RNA associated.	0.976
ENSAPEP00000008672	LSM10-2	ENSAPEP00000008672	ENSAPEP00000030739	Small nuclear ribonucleoprotein Sm D3.	LSM10, U7 small nuclear RNA associated.	0.976
ENSAPEP00000008689	LSM10	ENSAPEP00000008689	ENSAPEP00000030728	Small nuclear ribonucleoprotein Sm D3.	LSM10, U7 small nuclear RNA associated.	0.976
ENSAPEP00000008689	LSM10-2	ENSAPEP00000008689	ENSAPEP00000030739	Small nuclear ribonucleoprotein Sm D3.	LSM10, U7 small nuclear RNA associated.	0.976
LSM10	ENSAPEP00000008672	ENSAPEP00000030728	ENSAPEP00000008672	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein Sm D3.	0.976
LSM10	ENSAPEP00000008689	ENSAPEP00000030728	ENSAPEP00000008689	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein Sm D3.	0.976
LSM10-2	ENSAPEP00000008672	ENSAPEP00000030739	ENSAPEP00000008672	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein Sm D3.	0.976
LSM10-2	ENSAPEP00000008689	ENSAPEP00000030739	ENSAPEP00000008689	LSM10, U7 small nuclear RNA associated.	Small nuclear ribonucleoprotein Sm D3.	0.976