(35 nodes) Catalytic step 2 spliceosome network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000015821	Pre-mRNA processing factor 4Bb. (1017 aa)
	ENSAPEP00000016109	DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1258 aa)
	ENSAPEP00000017644	Small nuclear ribonucleoprotein 200 (U5). (1860 aa)
	ENSAPEP00000006818	Peptidylprolyl isomerase domain and WD repeat containing 1. (626 aa)
	ENSAPEP00000018100	Cactin. (872 aa)
	DDX41	DEAD-box helicase 41. (614 aa)
	ENSAPEP00000019196	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (166 aa)
	ENSAPEP00000020282	Small nuclear ribonucleoprotein 40 (U5). (347 aa)
	ENSAPEP00000020484	Methenyltetrahydrofolate synthetase domain containing. (411 aa)
	ENSAPEP00000021099	Crooked neck pre-mRNA splicing factor 1. (753 aa)
	ENSAPEP00000022611	SNW domain containing 1. (538 aa)
	ENSAPEP00000022617	Aquarius intron-binding spliceosomal factor. (1468 aa)
	ENSAPEP00000023511	RNA binding motif protein 22. (432 aa)
	ENSAPEP00000023685	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23. (802 aa)
	WDR25	WD repeat domain 25. (514 aa)
	ENSAPEP00000026669	Serine/arginine repetitive matrix 1. (862 aa)
	ENSAPEP00000027080	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (302 aa)
	ENSAPEP00000027269	Mtr4 exosome RNA helicase. (1037 aa)
	ENSAPEP00000028128	RRM domain-containing protein. (321 aa)
	ENSAPEP00000033401	Spliceosome associated factor 3, U4/U6 recycling protein. (947 aa)
	ENSAPEP00000006357	CWC15 spliceosome associated protein homolog. (239 aa)
	ENSAPEP00000004667	Elongation factor Tu GTP binding domain containing 2. (971 aa)
	ENSAPEP00000003698	CWC22 spliceosome associated protein homolog. (981 aa)
	ENSAPEP00000002005	RRM domain-containing protein. (306 aa)
	EFL1	Elongation factor like GTPase 1. (1131 aa)
	ENSAPEP00000000035	G patch domain containing 1. (941 aa)
	ENSAPEP00000017669	SEC63 domain-containing protein. (153 aa)
	ENSAPEP00000007915	Cell division cycle 40 homolog (S. cerevisiae). (459 aa)
	ENSAPEP00000008998	Serine/arginine repetitive matrix 2. (1317 aa)
	ENSAPEP00000010174	RNA binding motif protein X-linked. (390 aa)
	ENSAPEP00000010286	WD repeat domain containing 83. (317 aa)
	DHX35	DEAH-box helicase 35. (713 aa)
	ENSAPEP00000013735	XPA binding protein 2. (850 aa)
	ENSAPEP00000014148	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (161 aa)
	ENSAPEP00000015451	Ess-2 splicing factor homolog. (475 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	DHX35	ENSAPEP00000018830	ENSAPEP00000011220	DEAD-box helicase 41.	DEAH-box helicase 35.	0.781
DDX41	ENSAPEP00000000035	ENSAPEP00000018830	ENSAPEP00000000035	DEAD-box helicase 41.	G patch domain containing 1.	0.722
DDX41	ENSAPEP00000003698	ENSAPEP00000018830	ENSAPEP00000003698	DEAD-box helicase 41.	CWC22 spliceosome associated protein homolog.	0.850
DDX41	ENSAPEP00000006818	ENSAPEP00000018830	ENSAPEP00000006818	DEAD-box helicase 41.	Peptidylprolyl isomerase domain and WD repeat containing 1.	0.926
DDX41	ENSAPEP00000007915	ENSAPEP00000018830	ENSAPEP00000007915	DEAD-box helicase 41.	Cell division cycle 40 homolog (S. cerevisiae).	0.885
DDX41	ENSAPEP00000014148	ENSAPEP00000018830	ENSAPEP00000014148	DEAD-box helicase 41.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.813
DDX41	ENSAPEP00000016109	ENSAPEP00000018830	ENSAPEP00000016109	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box polypeptide 38.	0.817
DDX41	ENSAPEP00000019196	ENSAPEP00000018830	ENSAPEP00000019196	DEAD-box helicase 41.	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.880
DDX41	ENSAPEP00000023685	ENSAPEP00000018830	ENSAPEP00000023685	DEAD-box helicase 41.	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.	0.689
DDX41	ENSAPEP00000026669	ENSAPEP00000018830	ENSAPEP00000026669	DEAD-box helicase 41.	Serine/arginine repetitive matrix 1.	0.885
DDX41	ENSAPEP00000027080	ENSAPEP00000018830	ENSAPEP00000027080	DEAD-box helicase 41.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.627
DDX41	ENSAPEP00000027269	ENSAPEP00000018830	ENSAPEP00000027269	DEAD-box helicase 41.	Mtr4 exosome RNA helicase.	0.754
DDX41	WDR25	ENSAPEP00000018830	ENSAPEP00000026009	DEAD-box helicase 41.	WD repeat domain 25.	0.789
DHX35	DDX41	ENSAPEP00000011220	ENSAPEP00000018830	DEAH-box helicase 35.	DEAD-box helicase 41.	0.781
DHX35	EFL1	ENSAPEP00000011220	ENSAPEP00000000358	DEAH-box helicase 35.	Elongation factor like GTPase 1.	0.455
DHX35	ENSAPEP00000000035	ENSAPEP00000011220	ENSAPEP00000000035	DEAH-box helicase 35.	G patch domain containing 1.	0.800
DHX35	ENSAPEP00000002005	ENSAPEP00000011220	ENSAPEP00000002005	DEAH-box helicase 35.	RRM domain-containing protein.	0.401
DHX35	ENSAPEP00000003698	ENSAPEP00000011220	ENSAPEP00000003698	DEAH-box helicase 35.	CWC22 spliceosome associated protein homolog.	0.970
DHX35	ENSAPEP00000004667	ENSAPEP00000011220	ENSAPEP00000004667	DEAH-box helicase 35.	Elongation factor Tu GTP binding domain containing 2.	0.925
DHX35	ENSAPEP00000006357	ENSAPEP00000011220	ENSAPEP00000006357	DEAH-box helicase 35.	CWC15 spliceosome associated protein homolog.	0.904