(23 nodes) RNA recognition motif domain, eukaryote network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000027094	RRM domain-containing protein. (290 aa)
	ENSAPEP00000028277	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (461 aa)
	ENSAPEP00000032078	RNA binding motif protein 17. (419 aa)
	ENSAPEP00000033069	Serine and arginine rich splicing factor 2a. (220 aa)
	ENSAPEP00000034761	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2. (617 aa)
	ENSAPEP00000027054	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (626 aa)
	ENSAPEP00000025241	Zinc finger CCHC-type and RNA binding motif 1. (223 aa)
	ENSAPEP00000023908	RNA binding motif protein 14a. (546 aa)
	ENSAPEP00000034839	TIA1 cytotoxic granule-associated RNA binding protein-like 1. (382 aa)
	ENSAPEP00000023115	HIV-1 Tat specific factor 1. (456 aa)
	ENSAPEP00000022115	Uncharacterized protein. (227 aa)
	PUF60	Poly-U binding splicing factor b. (497 aa)
	ENSAPEP00000015663	ELAV-like protein; Belongs to the RRM elav family. (358 aa)
	ENSAPEP00000014640	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (634 aa)
	ENSAPEP00000010174	RNA binding motif protein X-linked. (390 aa)
	ENSAPEP00000009741	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
	ENSAPEP00000008840	RRM domain-containing protein. (215 aa)
	ENSAPEP00000006532	CCR4-NOT transcription complex, subunit 4a. (799 aa)
	ENSAPEP00000004470	Cytotoxic granule-associated RNA binding protein 1, like. (386 aa)
	ENSAPEP00000004378	Uncharacterized protein. (570 aa)
	ENSAPEP00000003513	Uncharacterized protein. (364 aa)
	ENSAPEP00000002543	Uncharacterized protein. (482 aa)
	ENSAPEP00000001724	U2 small nuclear RNA auxiliary factor 1. (232 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPEP00000001724	ENSAPEP00000003513	ENSAPEP00000001724	ENSAPEP00000003513	U2 small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.687
ENSAPEP00000001724	ENSAPEP00000004378	ENSAPEP00000001724	ENSAPEP00000004378	U2 small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.407
ENSAPEP00000001724	ENSAPEP00000004470	ENSAPEP00000001724	ENSAPEP00000004470	U2 small nuclear RNA auxiliary factor 1.	Cytotoxic granule-associated RNA binding protein 1, like.	0.687
ENSAPEP00000001724	ENSAPEP00000008840	ENSAPEP00000001724	ENSAPEP00000008840	U2 small nuclear RNA auxiliary factor 1.	RRM domain-containing protein.	0.847
ENSAPEP00000001724	ENSAPEP00000010174	ENSAPEP00000001724	ENSAPEP00000010174	U2 small nuclear RNA auxiliary factor 1.	RNA binding motif protein X-linked.	0.464
ENSAPEP00000001724	ENSAPEP00000022115	ENSAPEP00000001724	ENSAPEP00000022115	U2 small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.931
ENSAPEP00000001724	ENSAPEP00000025241	ENSAPEP00000001724	ENSAPEP00000025241	U2 small nuclear RNA auxiliary factor 1.	Zinc finger CCHC-type and RNA binding motif 1.	0.407
ENSAPEP00000001724	ENSAPEP00000027094	ENSAPEP00000001724	ENSAPEP00000027094	U2 small nuclear RNA auxiliary factor 1.	RRM domain-containing protein.	0.789
ENSAPEP00000001724	ENSAPEP00000028277	ENSAPEP00000001724	ENSAPEP00000028277	U2 small nuclear RNA auxiliary factor 1.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.993
ENSAPEP00000001724	ENSAPEP00000032078	ENSAPEP00000001724	ENSAPEP00000032078	U2 small nuclear RNA auxiliary factor 1.	RNA binding motif protein 17.	0.498
ENSAPEP00000001724	ENSAPEP00000033069	ENSAPEP00000001724	ENSAPEP00000033069	U2 small nuclear RNA auxiliary factor 1.	Serine and arginine rich splicing factor 2a.	0.847
ENSAPEP00000001724	ENSAPEP00000034761	ENSAPEP00000001724	ENSAPEP00000034761	U2 small nuclear RNA auxiliary factor 1.	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.	0.477
ENSAPEP00000001724	ENSAPEP00000034839	ENSAPEP00000001724	ENSAPEP00000034839	U2 small nuclear RNA auxiliary factor 1.	TIA1 cytotoxic granule-associated RNA binding protein-like 1.	0.687
ENSAPEP00000002543	ENSAPEP00000003513	ENSAPEP00000002543	ENSAPEP00000003513	Uncharacterized protein.	Uncharacterized protein.	0.508
ENSAPEP00000002543	ENSAPEP00000004470	ENSAPEP00000002543	ENSAPEP00000004470	Uncharacterized protein.	Cytotoxic granule-associated RNA binding protein 1, like.	0.508
ENSAPEP00000002543	ENSAPEP00000028277	ENSAPEP00000002543	ENSAPEP00000028277	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.709
ENSAPEP00000002543	ENSAPEP00000032078	ENSAPEP00000002543	ENSAPEP00000032078	Uncharacterized protein.	RNA binding motif protein 17.	0.775
ENSAPEP00000002543	ENSAPEP00000034839	ENSAPEP00000002543	ENSAPEP00000034839	Uncharacterized protein.	TIA1 cytotoxic granule-associated RNA binding protein-like 1.	0.508
ENSAPEP00000003513	ENSAPEP00000001724	ENSAPEP00000003513	ENSAPEP00000001724	Uncharacterized protein.	U2 small nuclear RNA auxiliary factor 1.	0.687
ENSAPEP00000003513	ENSAPEP00000002543	ENSAPEP00000003513	ENSAPEP00000002543	Uncharacterized protein.	Uncharacterized protein.	0.508