(13 nodes) Ras GTPase-activating protein, conserved site network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000026013	RAS p21 protein activator (GTPase activating protein) 1a. (1050 aa)
	ENSAPEP00000033923	Uncharacterized protein. (1056 aa)
	ENSAPEP00000032636	DAB2 interacting protein b. (1156 aa)
	ENSAPEP00000032440	Synaptic Ras GTPase activating protein 1b. (1225 aa)
	ENSAPEP00000031277	RAS p21 protein activator 3. (853 aa)
	ENSAPEP00000027018	IQ motif containing GTPase activating protein 2. (1662 aa)
	RASA2	RAS p21 protein activator 2. (837 aa)
	ENSAPEP00000019131	RAS protein activator like 3. (1154 aa)
	ENSAPEP00000017586	IQ motif containing GTPase activating protein 3. (1642 aa)
	RASAL1	RAS protein activator like 1. (751 aa)
	ENSAPEP00000010378	Neurofibromin 1b. (2763 aa)
	ENSAPEP00000008533	RAS protein activator like 2. (1407 aa)
	ENSAPEP00000000253	IQ motif containing GTPase activating protein 1. (1653 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPEP00000000253	ENSAPEP00000017586	ENSAPEP00000000253	ENSAPEP00000017586	IQ motif containing GTPase activating protein 1.	IQ motif containing GTPase activating protein 3.	0.898
ENSAPEP00000000253	ENSAPEP00000027018	ENSAPEP00000000253	ENSAPEP00000027018	IQ motif containing GTPase activating protein 1.	IQ motif containing GTPase activating protein 2.	0.897
ENSAPEP00000008533	ENSAPEP00000010378	ENSAPEP00000008533	ENSAPEP00000010378	RAS protein activator like 2.	Neurofibromin 1b.	0.689
ENSAPEP00000008533	ENSAPEP00000026013	ENSAPEP00000008533	ENSAPEP00000026013	RAS protein activator like 2.	RAS p21 protein activator (GTPase activating protein) 1a.	0.667
ENSAPEP00000008533	ENSAPEP00000031277	ENSAPEP00000008533	ENSAPEP00000031277	RAS protein activator like 2.	RAS p21 protein activator 3.	0.673
ENSAPEP00000008533	RASA2	ENSAPEP00000008533	ENSAPEP00000026195	RAS protein activator like 2.	RAS p21 protein activator 2.	0.673
ENSAPEP00000008533	RASAL1	ENSAPEP00000008533	ENSAPEP00000014931	RAS protein activator like 2.	RAS protein activator like 1.	0.661
ENSAPEP00000010378	ENSAPEP00000008533	ENSAPEP00000010378	ENSAPEP00000008533	Neurofibromin 1b.	RAS protein activator like 2.	0.689
ENSAPEP00000010378	ENSAPEP00000019131	ENSAPEP00000010378	ENSAPEP00000019131	Neurofibromin 1b.	RAS protein activator like 3.	0.689
ENSAPEP00000010378	ENSAPEP00000026013	ENSAPEP00000010378	ENSAPEP00000026013	Neurofibromin 1b.	RAS p21 protein activator (GTPase activating protein) 1a.	0.852
ENSAPEP00000010378	ENSAPEP00000031277	ENSAPEP00000010378	ENSAPEP00000031277	Neurofibromin 1b.	RAS p21 protein activator 3.	0.668
ENSAPEP00000010378	ENSAPEP00000032440	ENSAPEP00000010378	ENSAPEP00000032440	Neurofibromin 1b.	Synaptic Ras GTPase activating protein 1b.	0.689
ENSAPEP00000010378	ENSAPEP00000032636	ENSAPEP00000010378	ENSAPEP00000032636	Neurofibromin 1b.	DAB2 interacting protein b.	0.689
ENSAPEP00000010378	ENSAPEP00000033923	ENSAPEP00000010378	ENSAPEP00000033923	Neurofibromin 1b.	Uncharacterized protein.	0.689
ENSAPEP00000010378	RASA2	ENSAPEP00000010378	ENSAPEP00000026195	Neurofibromin 1b.	RAS p21 protein activator 2.	0.668
ENSAPEP00000010378	RASAL1	ENSAPEP00000010378	ENSAPEP00000014931	Neurofibromin 1b.	RAS protein activator like 1.	0.646
ENSAPEP00000017586	ENSAPEP00000000253	ENSAPEP00000017586	ENSAPEP00000000253	IQ motif containing GTPase activating protein 3.	IQ motif containing GTPase activating protein 1.	0.898
ENSAPEP00000017586	ENSAPEP00000027018	ENSAPEP00000017586	ENSAPEP00000027018	IQ motif containing GTPase activating protein 3.	IQ motif containing GTPase activating protein 2.	0.898
ENSAPEP00000019131	ENSAPEP00000010378	ENSAPEP00000019131	ENSAPEP00000010378	RAS protein activator like 3.	Neurofibromin 1b.	0.689
ENSAPEP00000019131	ENSAPEP00000026013	ENSAPEP00000019131	ENSAPEP00000026013	RAS protein activator like 3.	RAS p21 protein activator (GTPase activating protein) 1a.	0.667