(4 nodes) Ribosomal protein S18 superfamily network (Amphiprion percula)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSAPEP00000032302	Mitochondrial ribosomal protein S18C. (129 aa)
	ENSAPEP00000009679	Mitochondrial ribosomal protein S18A. (208 aa)
	ENSAPEP00000011469	Mitochondrial ribosomal protein S18B. (246 aa)
	ENSAPEP00000032493	Uncharacterized protein. (106 aa)

Your Current Organism:

Amphiprion percula

NCBI taxonomy Id: 161767
Other names: A. percula, Picasso clownfish, orange clownfish

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSAPEP00000009679	ENSAPEP00000011469	Mitochondrial ribosomal protein S18A.	Mitochondrial ribosomal protein S18B.	0.992
ENSAPEP00000009679	ENSAPEP00000032302	Mitochondrial ribosomal protein S18A.	Mitochondrial ribosomal protein S18C.	0.994
ENSAPEP00000009679	ENSAPEP00000032493	Mitochondrial ribosomal protein S18A.	Uncharacterized protein.	0.994
ENSAPEP00000011469	ENSAPEP00000009679	Mitochondrial ribosomal protein S18B.	Mitochondrial ribosomal protein S18A.	0.992
ENSAPEP00000011469	ENSAPEP00000032302	Mitochondrial ribosomal protein S18B.	Mitochondrial ribosomal protein S18C.	0.983
ENSAPEP00000011469	ENSAPEP00000032493	Mitochondrial ribosomal protein S18B.	Uncharacterized protein.	0.983
ENSAPEP00000032302	ENSAPEP00000009679	Mitochondrial ribosomal protein S18C.	Mitochondrial ribosomal protein S18A.	0.994
ENSAPEP00000032302	ENSAPEP00000011469	Mitochondrial ribosomal protein S18C.	Mitochondrial ribosomal protein S18B.	0.983
ENSAPEP00000032493	ENSAPEP00000009679	Uncharacterized protein.	Mitochondrial ribosomal protein S18A.	0.994
ENSAPEP00000032493	ENSAPEP00000011469	Uncharacterized protein.	Mitochondrial ribosomal protein S18B.	0.983