(18 nodes) Mixed, incl. ACP-like superfamily, and Thioesterase network (Psychromicrobium lacuslunae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJT40366.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)
	AJT42812.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (66 aa)
	AJT40663.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3915 aa)
	AJT40665.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	AJT43017.1	fatty-acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	AJT42060.1	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
	AJT42061.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily. (1601 aa)
	AJT42062.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2461 aa)
	AJT42456.1	Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	AJT42514.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AJT42515.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1088 aa)
	AJT42518.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (411 aa)
	AJT43189.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1045 aa)
	AJT42519.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (969 aa)
	AJT42520.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AJT42565.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)
	AJT42566.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	AJT42567.1	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)

Your Current Organism:

Psychromicrobium lacuslunae

NCBI taxonomy Id: 1618207
Other names: Arthrobacter sp. IHBB 11108, JCM 31143, KACC 19070, MCC 2780, MTCC 12460, P. lacuslunae, strain IHBB 11108

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJT40366.1	AJT40663.1	UM93_00190	UM93_02395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AJT40366.1	AJT42060.1	UM93_00190	UM93_12075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AJT40366.1	AJT42061.1	UM93_00190	UM93_12080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	0.722
AJT40366.1	AJT42062.1	UM93_00190	UM93_12085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
AJT40366.1	AJT42456.1	UM93_00190	UM93_14865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
AJT40366.1	AJT42514.1	UM93_00190	UM93_15290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
AJT40366.1	AJT42515.1	UM93_00190	UM93_15295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.837
AJT40366.1	AJT42518.1	UM93_00190	UM93_15310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.566
AJT40366.1	AJT42519.1	UM93_00190	UM93_15320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
AJT40366.1	AJT42520.1	UM93_00190	UM93_15330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
AJT40366.1	AJT42567.1	UM93_00190	UM93_15700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
AJT40366.1	AJT42812.1	UM93_00190	UM93_02390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
AJT40366.1	AJT43189.1	UM93_00190	UM93_15315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.589
AJT40663.1	AJT40366.1	UM93_02395	UM93_00190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
AJT40663.1	AJT40665.1	UM93_02395	UM93_02405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AJT40663.1	AJT42060.1	UM93_02395	UM93_12075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl carrier protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.887
AJT40663.1	AJT42061.1	UM93_02395	UM93_12080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the P-Pant transferase superfamily.	0.996
AJT40663.1	AJT42062.1	UM93_02395	UM93_12085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AJT40663.1	AJT42456.1	UM93_02395	UM93_14865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Long-chain fatty acid--CoA ligase; Activates fatty acids by binding to coenzyme A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJT40663.1	AJT42514.1	UM93_02395	UM93_15290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922