(12 nodes) Mixed, incl. Asparagine synthase, and NADH dehydrogenase (quinone) activity network (Psychromicrobium lacuslunae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJT42764.1	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
	AJT40538.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AJT40958.1	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (888 aa)
	AJT41151.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AJT41269.1	Arylmalonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	AJT41273.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
	AJT41274.1	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
	AJT42552.1	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (157 aa)
	AJT42553.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AJT42554.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
	AJT42555.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	AJT43197.1	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)

Your Current Organism:

Psychromicrobium lacuslunae

NCBI taxonomy Id: 1618207
Other names: Arthrobacter sp. IHBB 11108, JCM 31143, KACC 19070, MCC 2780, MTCC 12460, P. lacuslunae, strain IHBB 11108

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJT40958.1	AJT41151.1	UM93_04515	UM93_05805	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AJT40958.1	AJT41269.1	UM93_04515	UM93_06555	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arylmalonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
AJT40958.1	AJT42764.1	UM93_04515	UM93_01010	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AJT41151.1	AJT40958.1	UM93_05805	UM93_04515	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AJT41151.1	AJT42764.1	UM93_05805	UM93_01010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AJT41269.1	AJT40958.1	UM93_06555	UM93_04515	Arylmalonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
AJT41269.1	AJT42764.1	UM93_06555	UM93_01010	Arylmalonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
AJT41273.1	AJT41274.1	UM93_06600	UM93_06605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
AJT41274.1	AJT41273.1	UM93_06605	UM93_06600	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
AJT42552.1	AJT42553.1	UM93_15600	UM93_15605	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AJT42552.1	AJT42554.1	UM93_15600	UM93_15610	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
AJT42552.1	AJT42555.1	UM93_15600	UM93_15615	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AJT42553.1	AJT42552.1	UM93_15605	UM93_15600	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
AJT42553.1	AJT42554.1	UM93_15605	UM93_15610	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
AJT42553.1	AJT42555.1	UM93_15605	UM93_15615	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.403
AJT42554.1	AJT42552.1	UM93_15610	UM93_15600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
AJT42554.1	AJT42553.1	UM93_15610	UM93_15605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
AJT42554.1	AJT42555.1	UM93_15610	UM93_15615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
AJT42554.1	AJT43197.1	UM93_15610	UM93_15620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
AJT42555.1	AJT42552.1	UM93_15615	UM93_15600	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436