(11 nodes) Mixed, incl. Pentose transmembrane transport, and Fructose and mannose metabolism network (Psychromicrobium lacuslunae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJT43109.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
	AJT43110.1	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	AJT42110.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
	AJT42111.1	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
	AJT42112.1	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AJT42113.1	Ribose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (330 aa)
	AJT42114.1	D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)
	AJT42115.1	Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (440 aa)
	AJT42716.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	AJT42717.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (426 aa)
	AJT42718.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)

Your Current Organism:

Psychromicrobium lacuslunae

NCBI taxonomy Id: 1618207
Other names: Arthrobacter sp. IHBB 11108, JCM 31143, KACC 19070, MCC 2780, MTCC 12460, P. lacuslunae, strain IHBB 11108

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJT42110.1	AJT42111.1	UM93_12435	UM93_12440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
AJT42110.1	AJT42112.1	UM93_12435	UM93_12445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AJT42110.1	AJT42113.1	UM93_12435	UM93_12450	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.526
AJT42110.1	AJT42114.1	UM93_12435	UM93_12455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.537
AJT42110.1	AJT42115.1	UM93_12435	UM93_12460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.748
AJT42110.1	AJT43109.1	UM93_12435	UM93_12425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
AJT42110.1	AJT43110.1	UM93_12435	UM93_12430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
AJT42111.1	AJT42110.1	UM93_12440	UM93_12435	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.847
AJT42111.1	AJT42112.1	UM93_12440	UM93_12445	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AJT42111.1	AJT42113.1	UM93_12440	UM93_12450	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.489
AJT42111.1	AJT42114.1	UM93_12440	UM93_12455	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.489
AJT42111.1	AJT42115.1	UM93_12440	UM93_12460	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.574
AJT42111.1	AJT43109.1	UM93_12440	UM93_12425	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJT42111.1	AJT43110.1	UM93_12440	UM93_12430	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AJT42112.1	AJT42110.1	UM93_12445	UM93_12435	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.615
AJT42112.1	AJT42111.1	UM93_12445	UM93_12440	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
AJT42112.1	AJT42113.1	UM93_12445	UM93_12450	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.999
AJT42112.1	AJT42114.1	UM93_12445	UM93_12455	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	D-ribose transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
AJT42112.1	AJT42115.1	UM93_12445	UM93_12460	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.718
AJT42112.1	AJT42717.1	UM93_12445	UM93_16800	LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.927