(6 nodes) Inositol catabolic process network (Psychromicrobium lacuslunae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJT41490.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)
	AJT42508.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (385 aa)
	iolG	Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose). (319 aa)
	AJT42677.1	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	AJT42679.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AJT42715.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)

Your Current Organism:

Psychromicrobium lacuslunae

NCBI taxonomy Id: 1618207
Other names: Arthrobacter sp. IHBB 11108, JCM 31143, KACC 19070, MCC 2780, MTCC 12460, P. lacuslunae, strain IHBB 11108

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJT41490.1	AJT42508.1	UM93_08125	UM93_15235	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
AJT41490.1	AJT42677.1	UM93_08125	UM93_16545	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AJT41490.1	AJT42679.1	UM93_08125	UM93_16555	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJT42508.1	AJT41490.1	UM93_15235	UM93_08125	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
AJT42508.1	AJT42677.1	UM93_15235	UM93_16545	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJT42508.1	iolG	UM93_15235	UM93_16525	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).	0.468
AJT42677.1	AJT41490.1	UM93_16545	UM93_08125	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676
AJT42677.1	AJT42508.1	UM93_16545	UM93_15235	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJT42677.1	AJT42679.1	UM93_16545	UM93_16555	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
AJT42677.1	AJT42715.1	UM93_16545	UM93_16785	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
AJT42677.1	iolG	UM93_16545	UM93_16525	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).	0.894
AJT42679.1	AJT41490.1	UM93_16555	UM93_08125	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
AJT42679.1	AJT42677.1	UM93_16555	UM93_16545	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
AJT42679.1	iolG	UM93_16555	UM93_16525	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).	0.928
AJT42715.1	AJT42677.1	UM93_16785	UM93_16545	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
iolG	AJT42508.1	UM93_16525	UM93_15235	Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
iolG	AJT42677.1	UM93_16525	UM93_16545	Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).	5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.894
iolG	AJT42679.1	UM93_16525	UM93_16555	Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928