STRINGSTRING
AJT41988.1 AJT41988.1 deaD deaD xseB xseB xseA xseA AJT41543.1 AJT41543.1 AJT41519.1 AJT41519.1 kynU kynU rph rph AJT41325.1 AJT41325.1 AJT41308.1 AJT41308.1 rnhB rnhB AJT40953.1 AJT40953.1 AJT40940.1 AJT40940.1 AJT40939.1 AJT40939.1 pnp pnp AJT40503.1 AJT40503.1 AJT40491.1 AJT40491.1 deoC deoC AJT40391.1 AJT40391.1 AJT40386.1 AJT40386.1 AJT43081.1 AJT43081.1 kynA kynA AJT43113.1 AJT43113.1 AJT42551.1 AJT42551.1 AJT42604.1 AJT42604.1 AJT42641.1 AJT42641.1 AJT42699.1 AJT42699.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AJT41988.1Purine nucleoside phosphorylase DeoD-type; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
deaDCold-shock protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (645 aa)
xseBExodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (80 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (423 aa)
AJT41543.1DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (555 aa)
AJT41519.1NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. (338 aa)
kynUKynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (431 aa)
rphRibonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (249 aa)
AJT41325.1Nucleoside-triphosphate diphosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (213 aa)
AJT41308.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (550 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (237 aa)
AJT40953.1HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
AJT40940.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
AJT40939.1RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (948 aa)
pnpPolynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (757 aa)
AJT40503.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
AJT40491.1Deoxyguanosinetriphosphate triphosphohydrolase; dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
deoCDeoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (224 aa)
AJT40391.1Nucleotide pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
AJT40386.1Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (142 aa)
AJT43081.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
kynATryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety. (290 aa)
AJT43113.1Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
AJT42551.1Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)
AJT42604.1Pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
AJT42641.1Hypothetical protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (327 aa)
AJT42699.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
Your Current Organism:
Psychromicrobium lacuslunae
NCBI taxonomy Id: 1618207
Other names: Arthrobacter sp. IHBB 11108, JCM 31143, KACC 19070, MCC 2780, MTCC 12460, P. lacuslunae, strain IHBB 11108
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