(12 nodes) DEAD/DEAH box helicase domain network (Psychromicrobium lacuslunae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mfd	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1204 aa)
	AJT40595.1	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (681 aa)
	AJT40846.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (845 aa)
	AJT40939.1	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (948 aa)
	AJT41241.1	ATP-dependent DNA helicase RecG; Derived by automated computational analysis using gene prediction method: Protein Homology. (742 aa)
	AJT41364.1	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1313 aa)
	AJT41543.1	DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (555 aa)
	deaD	Cold-shock protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (645 aa)
	AJT41945.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (777 aa)
	AJT43081.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	AJT42117.1	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (724 aa)
	AJT43117.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1600 aa)

Your Current Organism:

Psychromicrobium lacuslunae

NCBI taxonomy Id: 1618207
Other names: Arthrobacter sp. IHBB 11108, JCM 31143, KACC 19070, MCC 2780, MTCC 12460, P. lacuslunae, strain IHBB 11108

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJT40595.1	AJT42117.1	UM93_01880	UM93_12475	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
AJT40846.1	AJT41364.1	UM93_03765	UM93_07280	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AJT41364.1	AJT40846.1	UM93_07280	UM93_03765	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
AJT41364.1	AJT41543.1	UM93_07280	UM93_08510	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.791
AJT41364.1	AJT43081.1	UM93_07280	UM93_11595	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJT41364.1	deaD	UM93_07280	UM93_10320	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cold-shock protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.830
AJT41543.1	AJT41364.1	UM93_08510	UM93_07280	DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJT41543.1	AJT42117.1	UM93_08510	UM93_12475	DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
AJT42117.1	AJT40595.1	UM93_12475	UM93_01880	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
AJT42117.1	AJT41543.1	UM93_12475	UM93_08510	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.533
AJT42117.1	AJT43081.1	UM93_12475	UM93_11595	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AJT42117.1	deaD	UM93_12475	UM93_10320	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cold-shock protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.957
AJT43081.1	AJT41364.1	UM93_11595	UM93_07280	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
AJT43081.1	AJT42117.1	UM93_11595	UM93_12475	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
deaD	AJT41364.1	UM93_10320	UM93_07280	Cold-shock protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.830
deaD	AJT42117.1	UM93_10320	UM93_12475	Cold-shock protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957