(5 nodes) Novobiocin biosynthesis network (Psychromicrobium lacuslunae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJT40550.1	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	hisC	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (374 aa)
	AJT42815.1	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
	AJT41761.1	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	pat	Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. (371 aa)

Your Current Organism:

Psychromicrobium lacuslunae

NCBI taxonomy Id: 1618207
Other names: Arthrobacter sp. IHBB 11108, JCM 31143, KACC 19070, MCC 2780, MTCC 12460, P. lacuslunae, strain IHBB 11108

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJT40550.1	AJT41761.1	UM93_01530	UM93_09975	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJT40550.1	AJT42815.1	UM93_01530	UM93_02460	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AJT40550.1	hisC	UM93_01530	UM93_01895	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.831
AJT40550.1	pat	UM93_01530	UM93_12290	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.845
AJT41761.1	AJT40550.1	UM93_09975	UM93_01530	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
AJT41761.1	AJT42815.1	UM93_09975	UM93_02460	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AJT41761.1	hisC	UM93_09975	UM93_01895	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.826
AJT41761.1	pat	UM93_09975	UM93_12290	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.851
AJT42815.1	AJT40550.1	UM93_02460	UM93_01530	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AJT42815.1	AJT41761.1	UM93_02460	UM93_09975	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AJT42815.1	hisC	UM93_02460	UM93_01895	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.959
AJT42815.1	pat	UM93_02460	UM93_12290	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.959
hisC	AJT40550.1	UM93_01895	UM93_01530	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
hisC	AJT41761.1	UM93_01895	UM93_09975	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
hisC	AJT42815.1	UM93_01895	UM93_02460	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
hisC	pat	UM93_01895	UM93_12290	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	0.920
pat	AJT40550.1	UM93_12290	UM93_01530	Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
pat	AJT41761.1	UM93_12290	UM93_09975	Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
pat	AJT42815.1	UM93_12290	UM93_02460	Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Prephenate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
pat	hisC	UM93_12290	UM93_01895	Aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.	0.920