(12 nodes) Mixed, incl. Iron-sulfur cluster assembly, and Cysteine desulfurase network (Corynebacterium phocae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APT92493.1	NADPH--quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	APT92495.1	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	APT93698.1	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	APT92496.1	Alpha 1,6 mannopyranosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (603 aa)
	APT93699.1	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	APT92497.1	Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
	APT92498.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	sufC	Cysteine desulfurase; Part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	APT92500.1	Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (414 aa)
	APT92502.1	Metal-sulfur cluster biosynthetic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	APT92503.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (543 aa)
	APT93700.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (72 aa)

Your Current Organism:

Corynebacterium phocae

NCBI taxonomy Id: 161895
Other names: C. phocae, CCUG 38205, CIP 105741, DSM 44612, JCM 12105, strain M408/89/1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APT92493.1	APT92495.1	CPHO_05860	CPHO_05870	NADPH--quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
APT92493.1	APT92496.1	CPHO_05860	CPHO_05880	NADPH--quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha 1,6 mannopyranosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
APT92493.1	APT93698.1	CPHO_05860	CPHO_05875	NADPH--quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
APT92495.1	APT92493.1	CPHO_05870	CPHO_05860	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH--quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
APT92495.1	APT92496.1	CPHO_05870	CPHO_05880	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha 1,6 mannopyranosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
APT92495.1	APT93698.1	CPHO_05870	CPHO_05875	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
APT92495.1	APT93699.1	CPHO_05870	CPHO_05885	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
APT92495.1	sufC	CPHO_05870	CPHO_05900	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine desulfurase; Part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
APT92496.1	APT92493.1	CPHO_05880	CPHO_05860	Alpha 1,6 mannopyranosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADPH--quinone reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
APT92496.1	APT92495.1	CPHO_05880	CPHO_05870	Alpha 1,6 mannopyranosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
APT92496.1	APT93698.1	CPHO_05880	CPHO_05875	Alpha 1,6 mannopyranosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spermidine/putrescine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
APT92497.1	APT92498.1	CPHO_05890	CPHO_05895	Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
APT92497.1	APT92500.1	CPHO_05890	CPHO_05905	Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.	0.968
APT92497.1	APT92502.1	CPHO_05890	CPHO_05915	Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-sulfur cluster biosynthetic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
APT92497.1	APT92503.1	CPHO_05890	CPHO_05920	Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
APT92497.1	APT93699.1	CPHO_05890	CPHO_05885	Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
APT92497.1	sufC	CPHO_05890	CPHO_05900	Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine desulfurase; Part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APT92498.1	APT92497.1	CPHO_05895	CPHO_05890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fe-S cluster assembly protein SufB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
APT92498.1	APT92500.1	CPHO_05895	CPHO_05905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.	0.976
APT92498.1	APT92502.1	CPHO_05895	CPHO_05915	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-sulfur cluster biosynthetic enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849