(7 nodes) Mixed, incl. Response to copper ion, and Glycosyl transferase 4-like network (Corynebacterium phocae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APT92079.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	APT92410.1	Copper resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	APT92411.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	APT92412.1	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	APT93688.1	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)
	APT92415.1	GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)
	APT92416.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)

Your Current Organism:

Corynebacterium phocae

NCBI taxonomy Id: 161895
Other names: C. phocae, CCUG 38205, CIP 105741, DSM 44612, JCM 12105, strain M408/89/1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APT92079.1	APT92410.1	CPHO_03305	CPHO_05375	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
APT92079.1	APT92411.1	CPHO_03305	CPHO_05380	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
APT92079.1	APT92412.1	CPHO_03305	CPHO_05385	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
APT92410.1	APT92079.1	CPHO_05375	CPHO_03305	Copper resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
APT92410.1	APT92411.1	CPHO_05375	CPHO_05380	Copper resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
APT92410.1	APT92412.1	CPHO_05375	CPHO_05385	Copper resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
APT92411.1	APT92079.1	CPHO_05380	CPHO_03305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
APT92411.1	APT92410.1	CPHO_05380	CPHO_05375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
APT92411.1	APT92412.1	CPHO_05380	CPHO_05385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
APT92412.1	APT92079.1	CPHO_05385	CPHO_03305	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
APT92412.1	APT92410.1	CPHO_05385	CPHO_05375	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Copper resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
APT92412.1	APT92411.1	CPHO_05385	CPHO_05380	Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
APT92415.1	APT92416.1	CPHO_05410	CPHO_05415	GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
APT92415.1	APT93688.1	CPHO_05410	CPHO_05405	GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
APT92416.1	APT92415.1	CPHO_05415	CPHO_05410	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
APT92416.1	APT93688.1	CPHO_05415	CPHO_05405	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
APT93688.1	APT92415.1	CPHO_05405	CPHO_05410	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
APT93688.1	APT92416.1	CPHO_05405	CPHO_05415	Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945