STRINGSTRING
lig lig ARJ04458.1 ARJ04458.1 ligA ligA ARJ07267.1 ARJ07267.1 ARJ07269.1 ARJ07269.1 ARJ05011.1 ARJ05011.1 ARJ06060.1 ARJ06060.1 ARJ07401.1 ARJ07401.1 ARJ06300.1 ARJ06300.1 ku ku ARJ06308.1 ARJ06308.1 ARJ06650.1 ARJ06650.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ligATP-dependent DNA ligase; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair. (510 aa)
ARJ04458.1PHP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
ligADNA ligase (NAD(+)) LigA; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (790 aa)
ARJ07267.1Flap endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
ARJ07269.1ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
ARJ05011.1ATP-dependent DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
ARJ06060.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
ARJ07401.1DNA polymerase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)
ARJ06300.1Fe-S cluster assembly protein HesB; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)
kuKu protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (317 aa)
ARJ06308.1ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA and has been shown to have polymerase activity; Derived by automated computational analysis using gene prediction method: Protein Homology. (902 aa)
ARJ06650.1Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
Your Current Organism:
Cnuibacter physcomitrellae
NCBI taxonomy Id: 1619308
Other names: C. physcomitrellae, CGMCC 1.15041, Cnuibacter physcomitrellae Zhou et al. 2016, DSM 29843, Microbacteriaceae bacterium XA, strain XA
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