(14 nodes) Oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor network (Cnuibacter physcomitrellae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARJ07113.1	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	ARJ04188.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (165 aa)
	ARJ04367.1	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	proC	Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. (277 aa)
	ARJ04425.1	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
	ARJ04561.1	Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis. (159 aa)
	folD	Bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (293 aa)
	ARJ04775.1	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	ARJ07337.1	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
	ARJ07341.1	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	ARJ05831.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	ARJ06291.1	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	ARJ06449.1	Flavin reductase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	ARJ06853.1	Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)

Your Current Organism:

Cnuibacter physcomitrellae

NCBI taxonomy Id: 1619308
Other names: C. physcomitrellae, CGMCC 1.15041, Cnuibacter physcomitrellae Zhou et al. 2016, DSM 29843, Microbacteriaceae bacterium XA, strain XA

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARJ04188.1	ARJ04425.1	B5808_02295	B5808_03695	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
ARJ04367.1	ARJ06291.1	B5808_03340	B5808_14535	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
ARJ04367.1	ARJ07337.1	B5808_03340	B5808_11295	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
ARJ04425.1	ARJ04188.1	B5808_03695	B5808_02295	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
ARJ04775.1	ARJ06291.1	B5808_05735	B5808_14535	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
ARJ06291.1	ARJ04367.1	B5808_14535	B5808_03340	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.597
ARJ06291.1	ARJ04775.1	B5808_14535	B5808_05735	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
ARJ06291.1	ARJ06853.1	B5808_14535	B5808_17705	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
ARJ06853.1	ARJ06291.1	B5808_17705	B5808_14535	Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
ARJ07113.1	ARJ07341.1	B5808_01105	B5808_11400	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
ARJ07337.1	ARJ04367.1	B5808_11295	B5808_03340	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
ARJ07341.1	ARJ07113.1	B5808_11400	B5808_01105	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Databases

Cooccurrence

Experiments

Fusion

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About