STRINGSTRING
der der yfhA yfhA proV proV clpB clpB recA recA hrpA hrpA gluA gluA nocP nocP CUU24019.1 CUU24019.1 CUU24018.1 CUU24018.1 CUU23982.1 CUU23982.1 araG araG ytfR ytfR ravA ravA rbsA rbsA glnG glnG hslU hslU yifB yifB bapA bapA ftsE ftsE livG livG livF livF ugpC ugpC tauB tauB yheS yheS yhdZ yhdZ yhbG yhbG yrbF yrbF fepC fepC ftsH ftsH sms sms yjjK yjjK CUU22886.1 CUU22886.1 thiQ thiQ hrpS hrpS yejF yejF oppD1 oppD1 yadG yadG fhuC fhuC metN metN CUU23092.1 CUU23092.1 CUU23114.1 CUU23114.1 lonA lonA mdlA mdlA mdlB mdlB CUU23230.1 CUU23230.1 dnaX dnaX gltL gltL modF modF modC modC CUU23394.1 CUU23394.1 yehX yehX glnQ glnQ ybiT ybiT yliA yliA potG potG artP artP clpA clpA cydC cydC cydD cydD rarA rarA msbA msbA ssuB ssuB CUU23555.1 CUU23555.1 ycfV ycfV potA potA oppD2 oppD2 oppF1 oppF1 malK1 malK1 CUU23785.1 CUU23785.1 CUU23804.1 CUU23804.1 nasD nasD btuD btuD sufC sufC atpD atpD pstB2 pstB2 dnaA dnaA xylG xylG appF appF CUU25613.1 CUU25613.1 dppD2 dppD2 dppF2 dppF2 rho rho CUU25498.1 CUU25498.1 CUU25458.1 CUU25458.1 malK2 malK2 dnaB dnaB gsiA gsiA dppD1 dppD1 dppF1 dppF1 CUU25250.1 CUU25250.1 yggR yggR tyrR tyrR pspF pspF sapD sapD sapF sapF oppF2 oppF2 oppD3 oppD3 znuC znuC ruvB ruvB yecC yecC fliI fliI rbsA-2 rbsA-2 phnC phnC phnL phnL phnK phnK rbsA-3 rbsA-3 CUU24609.1 CUU24609.1 mglA mglA yojI yojI cyaB cyaB hisP hisP ccmA ccmA cysA cysA pstB1 pstB1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
derGTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (497 aa)
yfhAPutative 2-component transcriptional regulator yfhA. (444 aa)
proVGlycine betaine/L-proline transport ATP-binding protein ProV. (399 aa)
clpBChaperone protein clpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (857 aa)
recAProtein recA (Recombinase A); Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (355 aa)
hrpAATP-dependent helicase. (1347 aa)
gluAGlutamate transport ATP-binding protein GluA. (264 aa)
nocPNopaline permease ATP-binding protein P. (260 aa)
CUU24019.1Peptide ABC transporter ATPase. (257 aa)
CUU24018.1ABC transporter permease. (261 aa)
CUU23982.1Putative ABC transport system, ATPase component. (378 aa)
araGL-arabinose transport ATP-binding protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family. (506 aa)
ytfRPutative ABC transport system, ATP-binding protein. (504 aa)
ravAATPase RavA. (498 aa)
rbsAATP-binding component of D-ribose high-affinity transport system; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (517 aa)
glnGTranscriptional regulatory protein glnG; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (469 aa)
hslUATP-dependent hsl protease ATP-binding subunit hslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (444 aa)
yifBPutative protein YifB. (506 aa)
bapAPutative ABC transport system, ATP-binding/permease protein. (610 aa)
ftsECell division ATP-binding protein ftsE; Part of the ABC transporter FtsEX involved in cellular division. (222 aa)
livGHigh-affinity branched-chain amino acid transport ATP-binding protein livG. (255 aa)
livFPhosphate import ATP-binding protein pstB; Belongs to the ABC transporter superfamily. (237 aa)
ugpCATP-binding component of sn-glycerol 3-phosphate transport system; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family. (357 aa)
tauBTaurine ATP-binding component of a transport system; Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Taurine importer (TC 3.A.1.17.1) family. (255 aa)
yheSPutative ABC transport system, ATP-binding protein. (634 aa)
yhdZPutative ATP-binding component of a transport system yhdZ. (253 aa)
yhbGPutative ABC transport system, ATP-binding protein. (241 aa)
yrbFPutative ABC transport system, ATP-binding protein yrbF. (285 aa)
fepCATP-binding component of ferric enterobactin transport fepC. (262 aa)
ftsHCell division protein ftsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (646 aa)
smsDNA repair radA-like protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (460 aa)
yjjKPutative ABC transport system, ATP-binding protein. (555 aa)
CUU22886.1Putative ABC transport system, ATP-binding protein. (232 aa)
thiQThiamine ABC transporter, ATP-binding protein thiQ; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family. (233 aa)
hrpSPathogenicity locus probable regulatory protein HrpS. (330 aa)
yejFPutative ABC transporter ATP-binding protein YejF. (253 aa)
oppD1Oligopeptide transport ATP-binding protein OppD. (288 aa)
yadGPutative ABC tranport system, ATP-binding protein. (308 aa)
fhuCFerrichrome transport ATP-binding protein fhuC. (264 aa)
metND-methionine transport ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (343 aa)
CUU23092.1Putative ABC transport system, ATP-binding protein. (245 aa)
CUU23114.1Putative ABC transport system, ATP-binding protein. (501 aa)
lonAATP-dependent protease La; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (784 aa)
mdlAPutative ABC superfamily ATP-binding/permease protein mdlA. (597 aa)
mdlBPutative ABC superfamily ATP-binding/permease protein mdlB. (589 aa)
CUU23230.1ABC transport system ATP-binding protein. (225 aa)
dnaXDNA polymerase III, tau and gamma subunits; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (650 aa)
gltLATP-binding protein of glutamate/aspartate transport system. (241 aa)
modFMolybdate ABC transporter, ATP-binding protein modF. (492 aa)
modCMolybdenum transport ATP-binding protein modC; Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Molybdate importer (TC 3.A.1.8) family. (352 aa)
CUU23394.1Putative ABC transport system, ATPase-binding component. (237 aa)
yehXPutative ABC transporter, ATP-binding protein. (311 aa)
glnQGlutamine transport ATP-binding protein glnQ. (240 aa)
ybiTPutative ABC transport system, ATP-binding protein ybiT. (530 aa)
yliAPutative ABC transport system, ATP-binding protein yliA; Belongs to the ABC transporter superfamily. (616 aa)
potGATP-binding component of putrescine transport system; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (377 aa)
artPATP-binding component of arginine transport system. (259 aa)
clpAATP-dependent Clp protease ATP-binding subunit clpA; Belongs to the ClpA/ClpB family. (758 aa)
cydCATP-binding/permease protein CydC. (575 aa)
cydDATP-binding/permease protein CydD. (586 aa)
rarAReplication-associated recombination protein A. (447 aa)
msbALipid A export ATP-binding/permease protein msbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (582 aa)
ssuBSulfonate import ATP-binding protein ssuB; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system. (261 aa)
CUU23555.1ABC transporter ATP-binding protein. (637 aa)
ycfVLipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. (234 aa)
potAATP-binding component of spermidine/putrescine transport; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (371 aa)
oppD2Putative ABC transport system, ATP-binding protein. (286 aa)
oppF1Putative ABC transport system, ATP-binding protein. (255 aa)
malK1Maltose/maltodextrin import ATP-binding protein MalK; Belongs to the ABC transporter superfamily. (372 aa)
CUU23785.1ATPase AAA. (650 aa)
CUU23804.1ATPase; Belongs to the ClpA/ClpB family. (912 aa)
nasDNitrate ABC transporter, ATP-binding protein. (266 aa)
btuDVitamin B12 import ATP-binding protein BtuD; Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system. (248 aa)
sufCIron-sulfur cluster biosynthesis protein sufC. (248 aa)
atpDMembrane-bound ATP synthase, F1 sector, beta-subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. (460 aa)
pstB2Phosphate transport ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (257 aa)
dnaAChromosomal replication initiator protein dnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (467 aa)
xylGATP-binding protein of xylose transport system; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family. (509 aa)
appFOligopeptide transport ATP-binding protein AppF; Belongs to the ABC transporter superfamily. (357 aa)
CUU25613.1Putative peptide import ATP-binding protein; Belongs to the ABC transporter superfamily. (335 aa)
dppD2Putative ABC transport system, ATP-binding protein; Belongs to the ABC transporter superfamily. (328 aa)
dppF2Putative ABC transport system, ATP-binding protein; Belongs to the ABC transporter superfamily. (334 aa)
rhoTranscription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (419 aa)
CUU25498.1Pilus assembly protein CpaF. (426 aa)
CUU25458.1Putative ABC transport system, ATP-binding protein; Belongs to the ABC transporter superfamily. (330 aa)
malK2Maltose/maltodextrin import ATP-binding protein MalK; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Maltooligosaccharide importer (TC 3.A.1.1.1) family. (382 aa)
dnaBReplicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (468 aa)
gsiAGlutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily. (537 aa)
dppD1Putative ABC transporter, ATP-binding protein. (282 aa)
dppF1Putative ABC transporter, ATP-binding protein. (223 aa)
CUU25250.1ABC transporter. (817 aa)
yggRTwitching motility protein. (340 aa)
tyrRRegulatory protein TyrR. (525 aa)
pspFPsp operon transcriptional activator. (335 aa)
sapDPeptide transport system ATP-binding protein sapD; Belongs to the ABC transporter superfamily. (330 aa)
sapFPeptide transport system ATP-binding protein sapF. (269 aa)
oppF2Oligopeptide transport ATP-binding protein oppF; Belongs to the ABC transporter superfamily. (333 aa)
oppD3Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily. (337 aa)
znuCABC transport system, ATP-binding protein znuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. (251 aa)
ruvBHolliday junction ATP-dependent DNA helicase ruvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (334 aa)
yecCPutative ABC transporter, ATP-biniding component. (250 aa)
fliIFlagellum-specific ATP synthase. (454 aa)
rbsA-2Putative ABC transport system, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (503 aa)
phnCPhosphonates import ATP-binding protein phnC; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. (278 aa)
phnLPhosphonates transport ATP-binding protein phnL. (234 aa)
phnKPhosphonates transport ATP-binding protein phnK. (253 aa)
rbsA-3Putative ABC transport system, ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. (494 aa)
CUU24609.1Lipopolysaccharide ABC transporter ATPase. (428 aa)
mglAATP-binding component of methyl-galactoside transport and galactose taxis. (506 aa)
yojIPutative ABC transport system, permease/ATP-binding protein yojI. (550 aa)
cyaBCytoplasmic membrane export protein, ATP-binding protein. (712 aa)
hisPATP-binding component of histidine transport. (257 aa)
ccmAHeme exporter protein A; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (207 aa)
cysAATP-binding component of sulfate permease A protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system. (362 aa)
pstB1Phosphate import ATP-binding protein pstB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family. (254 aa)
Your Current Organism:
Erwinia gerundensis
NCBI taxonomy Id: 1619313
Other names: CCOS 903, CCOS:903, E. gerundensis, Erwinia gerundensis Rezzonico et al. 2016, Erwinia sp. 08-046A, Erwinia sp. 08-069A, Erwinia sp. 08-085C, Erwinia sp. 6-RJ-7B, Erwinia sp. EM406, Erwinia sp. EM436, Erwinia sp. EM477, Erwinia sp. EM486, Erwinia sp. EM573, Erwinia sp. EM595, Erwinia sp. EM603, Erwinia sp. KAZ28, LMG 28990, LMG:28990, Pantoea sp. EM486, Pantoea sp. EM595, Pantoea sp. P10QLC, Pantoea sp. P8SAA, strain EM595
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