(21 nodes) Mixed, incl. Membrane organization, and Protein of unknown function (DUF2723) network (uncultured Bacteroides sp.)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SCH08588.1	Uncharacterised protein. (149 aa)
	SCH12371.1	DNA uptake lipoprotein. (274 aa)
	SCH20298.1	Protein of uncharacterised function (DUF1573). (133 aa)
	SCH58419.1	Protein of uncharacterised function (DUF3109). (193 aa)
	SCH65520.1	Protein of uncharacterised function (DUF2851). (420 aa)
	SCH70793.1	Uncharacterised protein. (278 aa)
	SCH70844.1	Uncharacterised protein. (176 aa)
	SCH70945.1	TonB-linked outer membrane protein%2C SusC/RagA family. (876 aa)
	SCH86958.1	Predicted membrane protein. (829 aa)
	SCH87996.1	Outer membrane protein. (189 aa)
	SCH88033.1	Periplasmic chaperone. (171 aa)
	SCH88072.1	Outer membrane protein omp85 precursor. (883 aa)
	SCH88143.1	Uncharacterised protein. (465 aa)
	SCI06077.1	Outer membrane protein/protective antigen OMA87. (767 aa)
	SCI23684.1	Uncharacterised protein. (543 aa)
	SCI23750.1	Protein of uncharacterised function (DUF2723). (592 aa)
	SCI23776.1	Uncharacterised protein. (510 aa)
	SCI61287.1	Protein of uncharacterised function (DUF2723). (1106 aa)
	SCI65091.1	Uncharacterised protein. (426 aa)
	SCI65220.1	Peptidylprolyl isomerase. (711 aa)
	SCI67601.1	Protein of uncharacterised function (DUF2795). (73 aa)

Your Current Organism:

uncultured Bacteroides sp.

NCBI taxonomy Id: 162156
Other names: u. Bacteroides sp.

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SCH08588.1	SCH12371.1	SAMEA3545309_00261	SAMEA3545309_00333	Uncharacterised protein.	DNA uptake lipoprotein.	0.680
SCH08588.1	SCH20298.1	SAMEA3545309_00261	SAMEA3545309_00493	Uncharacterised protein.	Protein of uncharacterised function (DUF1573).	0.517
SCH08588.1	SCH58419.1	SAMEA3545309_00261	SAMEA3545309_01015	Uncharacterised protein.	Protein of uncharacterised function (DUF3109).	0.534
SCH08588.1	SCH65520.1	SAMEA3545309_00261	SAMEA3545309_01161	Uncharacterised protein.	Protein of uncharacterised function (DUF2851).	0.559
SCH08588.1	SCH70793.1	SAMEA3545309_00261	SAMEA3545309_01192	Uncharacterised protein.	Uncharacterised protein.	0.439
SCH08588.1	SCH70844.1	SAMEA3545309_00261	SAMEA3545309_01193	Uncharacterised protein.	Uncharacterised protein.	0.698
SCH08588.1	SCH86958.1	SAMEA3545309_00261	SAMEA3545309_01462	Uncharacterised protein.	Predicted membrane protein.	0.649
SCH08588.1	SCH87996.1	SAMEA3545309_00261	SAMEA3545309_01484	Uncharacterised protein.	Outer membrane protein.	0.556
SCH08588.1	SCH88072.1	SAMEA3545309_00261	SAMEA3545309_01486	Uncharacterised protein.	Outer membrane protein omp85 precursor.	0.538
SCH08588.1	SCI06077.1	SAMEA3545309_00261	SAMEA3545309_01811	Uncharacterised protein.	Outer membrane protein/protective antigen OMA87.	0.700
SCH08588.1	SCI23684.1	SAMEA3545309_00261	SAMEA3545309_02132	Uncharacterised protein.	Uncharacterised protein.	0.520
SCH08588.1	SCI23750.1	SAMEA3545309_00261	SAMEA3545309_02134	Uncharacterised protein.	Protein of uncharacterised function (DUF2723).	0.579
SCH08588.1	SCI61287.1	SAMEA3545309_00261	SAMEA3545309_02836	Uncharacterised protein.	Protein of uncharacterised function (DUF2723).	0.605
SCH08588.1	SCI67601.1	SAMEA3545309_00261	SAMEA3545309_02948	Uncharacterised protein.	Protein of uncharacterised function (DUF2795).	0.469
SCH12371.1	SCH08588.1	SAMEA3545309_00333	SAMEA3545309_00261	DNA uptake lipoprotein.	Uncharacterised protein.	0.680
SCH12371.1	SCH58419.1	SAMEA3545309_00333	SAMEA3545309_01015	DNA uptake lipoprotein.	Protein of uncharacterised function (DUF3109).	0.556
SCH12371.1	SCH65520.1	SAMEA3545309_00333	SAMEA3545309_01161	DNA uptake lipoprotein.	Protein of uncharacterised function (DUF2851).	0.593
SCH12371.1	SCH70844.1	SAMEA3545309_00333	SAMEA3545309_01193	DNA uptake lipoprotein.	Uncharacterised protein.	0.625
SCH12371.1	SCH86958.1	SAMEA3545309_00333	SAMEA3545309_01462	DNA uptake lipoprotein.	Predicted membrane protein.	0.584
SCH12371.1	SCH87996.1	SAMEA3545309_00333	SAMEA3545309_01484	DNA uptake lipoprotein.	Outer membrane protein.	0.552