(24 nodes) rRNA-binding, and Structural constituent of ribosome network (Pseudoalteromonas telluritireducens)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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protein homology

Your Input:
	KYL31776.1	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	A2I98_06730	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	KYL35447.1	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)
	KYL35454.1	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	rpsN	30S ribosomal protein S14; Located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)
	KYL35541.1	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
	rplX	50S ribosomal protein L24; Assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
	KYL35133.1	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	KYL35134.1	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	A2I98_13910	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	rpsF	30S ribosomal protein S6; Binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; Derived by automated computational analysis using gene prediction method: Protein Homology. (113 aa)
	KYL32575.1	30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	KYL32576.1	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	KYL32580.1	50S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	KYL32581.1	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	rpsJ	Glycerol-3-phosphate 1-O-acyltransferase; PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa)
	KYL32171.1	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
	rplD	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	rplW	50S ribosomal protein L23; Binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
	KYL32174.1	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	KYL32176.1	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)
	KYL32177.1	30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	KYL32178.1	50S ribosomal protein L16; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	KYL32179.1	50S ribosomal protein L29; One of the stabilizing components for the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (63 aa)

Your Current Organism:

Pseudoalteromonas telluritireducens

NCBI taxonomy Id: 162160
Other names: DSM 16098, P. telluritireducens, Pseudoalteromonas sp. Se-1-2-red, Pseudoalteromonas sp. Te-1-1, VKM B-2382, strain Se-1-2-red

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A2I98_06730	A2I98_13910	A2I98_06730	A2I98_13910	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I methionyl aminopeptidase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL31776.1	A2I98_06730	A2I98_01865	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32171.1	A2I98_06730	A2I98_18430	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32174.1	A2I98_06730	A2I98_18445	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32176.1	A2I98_06730	A2I98_18455	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32177.1	A2I98_06730	A2I98_18460	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32178.1	A2I98_06730	A2I98_18465	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L16; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32179.1	A2I98_06730	A2I98_18470	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L29; One of the stabilizing components for the large ribosomal subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
A2I98_06730	KYL32575.1	A2I98_06730	A2I98_16640	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32576.1	A2I98_06730	A2I98_16645	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32580.1	A2I98_06730	A2I98_16665	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL32581.1	A2I98_06730	A2I98_16670	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35133.1	A2I98_06730	A2I98_07985	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35134.1	A2I98_06730	A2I98_07990	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35447.1	A2I98_06730	A2I98_06740	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35454.1	A2I98_06730	A2I98_06775	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L6; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	KYL35541.1	A2I98_06730	A2I98_06790	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L5; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	rplD	A2I98_06730	A2I98_18435	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	rplW	A2I98_06730	A2I98_18440	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L23; Binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A2I98_06730	rplX	A2I98_06730	A2I98_06795	DNA-directed RNA polymerase subunit alpha; Catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	50S ribosomal protein L24; Assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999

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